Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01259 ATGCCACAAAAGGGAATGAGGAGTGTGTTCTTCAATTCTCCAATTTCTTCTTCTGTACCGAGCACGCCGTCGTCGCACTCGTCTCGACCCACTTTATCGGATTCAATGGTGGAGGAGAATCTTGAAGTTGCAGAATCGTTTGTGATGAGGTGGAGACCTGATTCCACCGTTGTTGGTTTTTTGTTTCAAGGAGATGACCGTGATGAAGCTCGAAAGTATATCAAAGCCGTTATGGGTTTGTATAAGTCCATGCACAGCCTTGCTTCTCGGGATTCATCTTCCCAGAAGCTTATGCGTGCTCATGATTTGATGAAGATAGCTATGGAGAGACTACAGAAAGAGTTTTATCAGATTTTGTCAGCTAATCGAGAGTATTTGTATCCGGAATCGGTTTCTGGCGTCCAATCACCGATGACGATATCGACCAGATCGAGTGTTTCTGATTTTGAATTGGAATCGGAAGATGAATTCCGATTTGCTAATGAATCTATTGCGGAGGTTGAGCGAGTTTCTATGTCGGCTATGGCGGATTTGAAAGCAATTGCGGATTGTATGATATCGACGGGCTATGGTAAAGAATGTGTGAAGGTTTATAAAATTGTGAGGAAGTCGATAATTGATGAGAGTCTCTATAATCTAGGGATTGAGAAATTGAGTTTTTCGAAAGTTCAGAAGATGGATTGGGAGGTTTTGGAAGTCAAAATCAAAATCTGGTTGAAAGGTGTGAAAACGGCAGTGAAGTCTTTGTTTGAAGGAGAGAAAATCCTTTGCGATCATGTTTTCTCAGGTTCCGTTTCAATAAGAGAAACGTGCTTCGCTCAAATTTCCAAAGACGGAGCAGCAATTCTGTTTGGATTTCCAGAATTAGTTGCGAAATACAAGAAAACTCCAGAGAAAATTTTCATTACGCTAGATCTATACGAAGCCATAGCCGATCTCTGGCCGGAGATCGATTACATTTTCTCATCCACAGCAACATCAATGGTACAGTCACAAGCCGTCAGCTCACTAATCAAACTCGGAGAGAACATTCGAACATTAATCTCCGAATTCGAAATGGCTATTCAGAAAGAATCATCGAAAACGCCTATTCCTAGAGGCGGAGTTCATCCACTCACTCGCTACGTGATGAACTACATCTCATTCCTCTCCGATTACAGTGGAATACTAAACGACATTGTAGCCGATTGGCCTTTAGCAACAAAATTATCAATGCCAGAATCATATTATGGAACACCTAAACAAGAAGATAGTCCGATTACCTTACGTTTCGCTTGGTTGATCCTCGTCCTCCTTTGCAAACTAGACGGCAAAGCAGAGCATTACAACGACGTCGCTCTCTCCTACTTGTTCTTAGCAAACAATCTCCAGTACGTCGTTGAAAAAGTCCGTACCTCGAATCTGAGATTCATCCTTGGCAGCGACTGGGTTGAGAGACACGAATCGAAGATCAAACTGTACTCCTCCAAGTATAGACGCATTGGATGGAGTGGAGTTTTCTCGTCGCTACCGAGGGATGTGACGGCGGAAATATCGCCGGAGGAAGCAAGAGAATCGTTCAGAAATTTCAACAGAGCTTTTGAAGAAACTTACAGAAAACAAACCTCATGGATCGTTCCCGATCAGAAGCTTCGTGATGAAATAAAGATCTCATTAGCGAGGGAAATTGGAGCTCTTTATGGCGAGTTTTACACGAGGAATCGGGTTCGGGTTAGGCGGGTTTCTGGGTCGGATCACGCGGTCCGATTATCGCCTGATGATTTGGGTAACTATTTATCGGATCTATTTACGGGTATGGATCCGAAAGTGTTGGGAGCGGGTCCTCGTCTCATTCATCGTCCCATTCCTCGCCGTCTTCTCGAGGGAGATTAG 1872 43.64 MPQKGMRSVFFNSPISSSVPSTPSSHSSRPTLSDSMVEENLEVAESFVMRWRPDSTVVGFLFQGDDRDEARKYIKAVMGLYKSMHSLASRDSSSQKLMRAHDLMKIAMERLQKEFYQILSANREYLYPESVSGVQSPMTISTRSSVSDFELESEDEFRFANESIAEVERVSMSAMADLKAIADCMISTGYGKECVKVYKIVRKSIIDESLYNLGIEKLSFSKVQKMDWEVLEVKIKIWLKGVKTAVKSLFEGEKILCDHVFSGSVSIRETCFAQISKDGAAILFGFPELVAKYKKTPEKIFITLDLYEAIADLWPEIDYIFSSTATSMVQSQAVSSLIKLGENIRTLISEFEMAIQKESSKTPIPRGGVHPLTRYVMNYISFLSDYSGILNDIVADWPLATKLSMPESYYGTPKQEDSPITLRFAWLILVLLCKLDGKAEHYNDVALSYLFLANNLQYVVEKVRTSNLRFILGSDWVERHESKIKLYSSKYRRIGWSGVFSSLPRDVTAEISPEEARESFRNFNRAFEETYRKQTSWIVPDQKLRDEIKISLAREIGALYGEFYTRNRVRVRRVSGSDHAVRLSPDDLGNYLSDLFTGMDPKVLGAGPRLIHRPIPRRLLEGD 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19404241 19406120 - MELO3C013670.2.1 Cme11g01259 341922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01259 623 MobiDBLite consensus disorder prediction 12 35 - -
Cme11g01259 623 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 24 601 - -
Cme11g01259 623 Gene3D Exocyst complex component Exo70 55 602 - -
Cme11g01259 623 SUPERFAMILY Cullin repeat-like 60 596 IPR016159 -
Cme11g01259 623 Pfam Exo70 exocyst complex subunit 238 594 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cme11g01259 623 PANTHER EXOCYST COMPLEX PROTEIN EXO70 24 601 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01259 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101212978 1077.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00847 Cme-Chr10:5690741 Cme11g01259 Cme-Chr11:19404241 2.95E-174 dispersed
Cme11g01259 Cme-Chr11:19404241 Cme12g01592 Cme-Chr12:23218332 2.98E-104 dispersed
Cme02g00990 Cme-Chr2:14729508 Cme11g01259 Cme-Chr11:19404241 4.26E-106 transposed
Cme04g01362 Cme-Chr4:19219097 Cme11g01259 Cme-Chr11:19404241 4.82E-111 transposed
Cme07g01189 Cme-Chr7:16194477 Cme11g01259 Cme-Chr11:19404241 6.21E-94 transposed
Cme10g00165 Cme-Chr10:1139854 Cme11g01259 Cme-Chr11:19404241 3.06E-91 transposed
Cme12g00048 Cme-Chr12:469752 Cme11g01259 Cme-Chr11:19404241 1.29E-83 transposed
Cme12g00256 Cme-Chr12:2931087 Cme11g01259 Cme-Chr11:19404241 0 transposed
Cme12g01942 Cme-Chr12:25362669 Cme11g01259 Cme-Chr11:19404241 8.55E-75 transposed
Cme11g01259 Cme-Chr11:19404241 Cme04g02590 Cme-Chr4:31896591 0 wgd
Cme11g01259 Cme-Chr11:19404241 Cme08g02366 Cme-Chr8:30572730 9.19E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g377 . . Bda02g00802 Bda09g01492 Bpe01g00153 . Bma14g00483 . . . . . . . Sed13g1351 Cpe05g00891 . Bhi08g00343 Tan01g2524 Cmetu12g0712 . . . Lcy11g0247 Cla02g01331 Cam02g1412 Cec02g1430 Cco02g1463 Clacu02g1391 Cmu02g1351 Cre02g1670 Cone1ag0674 Cone5ag1180 Cone18ag0321 Cone11ag1266 . Csa06g01715 . Cme11g01259 Blo13g01090 Blo14g00136 Bda07g00609 . Bpe08g00122 Bpe11g00785 Bma07g00116 Bma11g00137 Sed01g0928 Cmo02g00840 Cmo20g00472 Cma02g00839 Cma20g00434 . . . . Bhi10g00657 Tan05g0340 Cmetu11g2447 . Hepe08g0821 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g00165 . 14 651 EXO70 exocyst subunit family AT5G03540 77.1 5.7e-287 983.4
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G03540 70.6 1.5e-263 905.6
Cme08g01155 . 58 696 EXO70 exocyst subunit family AT5G52340 79.7 1.3e-296 1015.4
Cme10g00165 . 16 651 EXO70 exocyst subunit family AT5G52340 74.2 9.3e-271 929.5
Cme08g01155 . 202 689 EXO70 exocyst subunit family AT5G52350 63.2 5.8e-174 607.8
Cme10g00165 . 151 651 EXO70 exocyst subunit family AT5G52350 60.6 1.2e-168 590.1
Cme12g00048 . 46 668 EXO70 exocyst subunit family AT5G58430 67.4 1.2e-246 849.4
Cme12g00048 . 46 667 EXO70 exocyst subunit family AT1G07000 53.0 2.2e-176 615.9
Cme07g01926 . 62 675 EXO70 exocyst subunit family AT5G13150 53.9 1.0e-171 600.5
Cme09g01028 . 99 710 EXO70 exocyst subunit family AT5G13990 54.2 5.2e-190 661.4
Cme04g01362 . 9 609 EXO70 exocyst subunit family AT1G72470 64.4 4.3e-215 744.6
Cme04g01362 . 9 607 EXO70 exocyst subunit family AT1G54090 62.2 2.2e-208 722.2
Cme04g01362 . 9 608 EXO70 exocyst subunit family AT3G14090 64.7 9.6e-220 760.0
Cme02g00990 . 13 651 EXO70 exocyst subunit family AT5G50380 62.6 3.3e-229 791.6
Cme12g01592 . 1 635 EXO70 exocyst subunit family AT5G50380 61.8 8.3e-225 776.9
Cme03g01702 . 13 682 EXO70 exocyst subunit family AT4G31540 73.2 4.2e-293 1003.8
Cme11g01259 . 33 598 EXO70 exocyst subunit family AT3G55150 50.3 3.1e-149 525.8
Cme04g02590 . 27 632 EXO70 exocyst subunit family AT3G09520 54.4 1.4e-178 623.2
Cme11g01259 . 16 598 EXO70 exocyst subunit family AT5G59730 50.8 1.4e-154 543.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001818 3 2 3 3 3 2 0 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 3 3 2 2 2 0 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01259 Cme_Chr11 FPKM 1.276405 0.776435 0.621554 0.320664 3.377924 3.267386 3.048437 0.0 0.312044 0.238797