Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01283 ATGGCTCACTCTTCTCTTCCAATCTTTTTAGATCCTCCAAATTGGCATCAATCGAATCAGGCAGCAGCAACAAACGACGATCATCAAGATCCACGTCAGCTTCCGGCAGCATTTCTACCACCGCCGCCGCCTTCGACGGGTCATGGAGGAGGTGGAATCCGGCCAAATTCTATGGCGTATAGAGCGCGGCTAGCAATGATACCGCAGCCGGAGGCAGCATTAAAATGCCCTCGTTGTGATTCAACAAATACAAAATTCTGCTATTTCAACAATTACAGCCTTTCTCAGCCGCGCCATTTCTGTAAAGCCTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGCGGTGGCTTTCGTAAGAACAAGAAGAAGAAGAAGACATCTAATAACCGATCTAAGTCCCCCACTCCCTCTCAATCTCAATTGGGTAATTCAAGATCAATAATGTCAAGAAATTGCAACAACATTGAGAGTAGTAATACAACGAGGGATTTTCCATCACATCCTTCATTACAATTACCTTCGATAAACATTATTCCATCTCTTCAATCACAGATTTCTCGTAGTTTTGGAAACAACTTTGCTGGAATTCACATCAATAATTCCACTGCCACCGCCGCCAGGGAATTCGACCAATGGCAACGTTTTCAACAACAACCATTCCTCGTCGCGGGACTTGAATCTCCGACCACCACGACAACTGCAGCAGAATATCCAGAAATTGATGTCAACAACAACAACTTTGGTGCTAACTCATTACAACAATCAAGTGGTTTGGTACAATACAACAACAATAATAATTGTCCTCATCAACAACAACTGCAGAATCTGACACAGTTTTCGAGAATTCCTATGAAAAATGAAGAACAAAACCAAGAACAAGGAACAATGTTATCAAATTTCTTACGACCAATTGATCAAAACAACAGCCAGTTTTGGGGAAGTGAACATCAAAATTCATGGACAGATCATCATTTGTCAGCTCTAAGTTCTTCTTCAAGCAGCCATCTTTTGTAA 1032 43.41 MAHSSLPIFLDPPNWHQSNQAAATNDDHQDPRQLPAAFLPPPPPSTGHGGGGIRPNSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKTSNNRSKSPTPSQSQLGNSRSIMSRNCNNIESSNTTRDFPSHPSLQLPSINIIPSLQSQISRSFGNNFAGIHINNSTATAAREFDQWQRFQQQPFLVAGLESPTTTTTAAEYPEIDVNNNNFGANSLQQSSGLVQYNNNNNCPHQQQLQNLTQFSRIPMKNEEQNQEQGTMLSNFLRPIDQNNSQFWGSEHQNSWTDHHLSALSSSSSSHLL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19582850 19584734 + MELO3C013693.2.1 Cme11g01283 341946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01283 343 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 12 319 - -
Cme11g01283 343 MobiDBLite consensus disorder prediction 11 56 - -
Cme11g01283 343 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 319 IPR045174 GO:0003700|GO:0006355
Cme11g01283 343 MobiDBLite consensus disorder prediction 136 173 - -
Cme11g01283 343 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
Cme11g01283 343 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
Cme11g01283 343 MobiDBLite consensus disorder prediction 11 27 - -
Cme11g01283 343 MobiDBLite consensus disorder prediction 115 173 - -
Cme11g01283 343 Pfam Dof domain, zinc finger 73 128 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme11g01283 Cme12g00200 CCT
Cme11g01283 Cme12g00200 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01283 Cme-Chr11:19582850 Cme11g01764 Cme-Chr11:25878348 5.33E-35 dispersed
Cme11g01283 Cme-Chr11:19582850 Cme12g00200 Cme-Chr12:2069742 7.98E-58 wgd
Cme11g01283 Cme-Chr11:19582850 Cme04g02612 Cme-Chr4:32047295 1.33E-46 wgd
Cme11g01283 Cme-Chr11:19582850 Cme08g02396 Cme-Chr8:30824290 1.13E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42187 PF02701 zf-Dof 4.90E-33 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01283 - - csv:101220917 552.362