Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01284 ATGGAGGAACATAACAATGGCGGCTCCTTTCGGAGTTTGATCGACTTGGTGAACGATGTTGCTTCAATCTCTGACTTCAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGACTGAAGCTGTTGATCCCAATGTTTGAAGAGATGAGGGATATGAAGCAACCGTTGCCTGATGATACCGTTAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACGAAGGAGTTGCTTAGACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCATATTTTGAATCAATTTCACAAGGTGACAGCAAGACTGGAGCAAGCTCTGAATGAAATTTCACATGAAGCTCTTGACATATCCGATGAAGTCAAGGAGCAGGTTGACCTTGTTCTCTCTCAATTCAAAAGGGCTAGAGAAAGGAATGACACACAAGATGCTGAGCTGTATGTTAACCTGAACTCTCTCTATAACAACAGAGATGTTGCTACCGATCCTTCTGTCTTGAAAGGATTGGCTGAGAAGTTGCAATTGATGGATATAGCTGATCTTACTCAAGAATCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGAGGGAGATTTGAGAAAATGTCAATACTATTGAAGAGAATAAAAGATTTTATGCTAACTGAAAACCCTGAATTTGGTGCTTCTTCAAAAGAACAGAGTCATCCTCGCACTGGTGGACAAGCATCTGCTCGTAAGAAAGATATATCGTCCCTTCACATACCTGAAGACTTTCGATGCCCCATATCCCTAGATTTGATGAAAGATCCCGTCATTGTCTCTACAGGGCAGACCTATGAACGTGGTTTCATTGAGAAGTGGCTGGCAGATGGACACATGACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGTCAATGGGATCGAACCACCACAACGTTCCAGCAGTTCTCAGCCAATTGAGTTGACTCCAGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATCCCTCTTCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTACTTAACCTATCAATTTGTGACAATAATAAGAGAAGCATCATGGCCTGTAGGGCTGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCTACTCTTTTCAGTCTCTCTGTTGTAGACGAGTATAAAATAATGATCGGCGCATCGGGTGCCATTCTTCCACTTATTGCACTACTTAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTATTCAACTTATGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGCGGTGTTGTTTCCATACTAATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCCAGCAATTCCGAAGGACGAGCTGCAATAGGAGCAGCCGAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAATAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTCGAAGCAAAGGAGCTTGGAGTGATTGGTTTGCTTATGGATATGGCAGAAAATGGAACAGACCGAGGTAAGCGAAAAGCAACCCAATTGCTCGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAATCTCAGTCTCAATCCCAGCCGTTAATACCACCACCTTCCGCAATCGGCAACGTTGAAAGCTGA 1977 44.61 MEEHNNGGSFRSLIDLVNDVASISDFRYAVRKQYCNLARRLKLLIPMFEEMRDMKQPLPDDTVKALASLKEALESTKELLRHGSEGSKIYLALEREHILNQFHKVTARLEQALNEISHEALDISDEVKEQVDLVLSQFKRARERNDTQDAELYVNLNSLYNNRDVATDPSVLKGLAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKRIKDFMLTENPEFGASSKEQSHPRTGGQASARKKDISSLHIPEDFRCPISLDLMKDPVIVSTGQTYERGFIEKWLADGHMTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSSSSQPIELTPAERSKYEALLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMACRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDMAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQSQPLIPPPSAIGNVES 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19590109 19594660 - MELO3C013694.2.1 Cme11g01284 341947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01284 658 MobiDBLite consensus disorder prediction 229 250 - -
Cme11g01284 658 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Cme11g01284 658 CDD RING-Ubox_PUB 262 304 IPR045210 -
Cme11g01284 658 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Cme11g01284 658 SMART arm_5 545 585 IPR000225 GO:0005515
Cme11g01284 658 SMART arm_5 504 544 IPR000225 GO:0005515
Cme11g01284 658 SMART arm_5 422 462 IPR000225 GO:0005515
Cme11g01284 658 SMART arm_5 381 421 IPR000225 GO:0005515
Cme11g01284 658 SMART arm_5 463 503 IPR000225 GO:0005515
Cme11g01284 658 MobiDBLite consensus disorder prediction 230 244 - -
Cme11g01284 658 Gene3D - 335 491 IPR011989 -
Cme11g01284 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 430 IPR000225 GO:0005515
Cme11g01284 658 Gene3D - 9 120 IPR036537 GO:0007166
Cme11g01284 658 Gene3D - 494 645 IPR011989 -
Cme11g01284 658 PANTHER U BOX DOMAIN-CONTAINING 11 639 - -
Cme11g01284 658 MobiDBLite consensus disorder prediction 633 649 - -
Cme11g01284 658 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Cme11g01284 658 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 639 - -
Cme11g01284 658 Pfam Armadillo/beta-catenin-like repeat 464 502 IPR000225 GO:0005515
Cme11g01284 658 Pfam Armadillo/beta-catenin-like repeat 382 420 IPR000225 GO:0005515
Cme11g01284 658 Pfam Armadillo/beta-catenin-like repeat 545 584 IPR000225 GO:0005515
Cme11g01284 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cme11g01284 658 SUPERFAMILY ARM repeat 353 625 IPR016024 -
Cme11g01284 658 SUPERFAMILY RING/U-box 252 332 - -
Cme11g01284 658 MobiDBLite consensus disorder prediction 633 658 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme11g01284 Cme12g00199 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02175 Cme-Chr3:28801416 Cme11g01284 Cme-Chr11:19590109 1.09E-48 dispersed
Cme10g00643 Cme-Chr10:4098358 Cme11g01284 Cme-Chr11:19590109 5.81E-48 dispersed
Cme11g01052 Cme-Chr11:15335584 Cme11g01284 Cme-Chr11:19590109 5.55E-156 dispersed
Cme11g01284 Cme-Chr11:19590109 Cme12g01264 Cme-Chr12:20726204 7.51E-94 dispersed
Cme01g00947 Cme-Chr1:11001499 Cme11g01284 Cme-Chr11:19590109 4.26E-08 transposed
Cme03g00268 Cme-Chr3:3445376 Cme11g01284 Cme-Chr11:19590109 5.05E-113 transposed
Cme03g01477 Cme-Chr3:24005512 Cme11g01284 Cme-Chr11:19590109 2.15E-32 transposed
Cme04g00172 Cme-Chr4:1298071 Cme11g01284 Cme-Chr11:19590109 8.19E-09 transposed
Cme04g01429 Cme-Chr4:20321918 Cme11g01284 Cme-Chr11:19590109 5.39E-88 transposed
Cme05g01074 Cme-Chr5:16603013 Cme11g01284 Cme-Chr11:19590109 3.82E-69 transposed
Cme08g00355 Cme-Chr8:2245658 Cme11g01284 Cme-Chr11:19590109 2.07E-59 transposed
Cme09g01373 Cme-Chr9:18986610 Cme11g01284 Cme-Chr11:19590109 3.63E-06 transposed
Cme09g01399 Cme-Chr9:19176931 Cme11g01284 Cme-Chr11:19590109 5.53E-126 transposed
Cme10g00093 Cme-Chr10:668933 Cme11g01284 Cme-Chr11:19590109 0 transposed
Cme10g01508 Cme-Chr10:18915283 Cme11g01284 Cme-Chr11:19590109 3.26E-156 transposed
Cme12g00199 Cme-Chr12:2053105 Cme11g01284 Cme-Chr11:19590109 0 transposed
Cme11g01284 Cme-Chr11:19590109 Cme12g00198 Cme-Chr12:2050619 4.07E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01284 - - csv:101221150 1206.82