Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01284 | ATGGAGGAACATAACAATGGCGGCTCCTTTCGGAGTTTGATCGACTTGGTGAACGATGTTGCTTCAATCTCTGACTTCAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCTAGGCGACTGAAGCTGTTGATCCCAATGTTTGAAGAGATGAGGGATATGAAGCAACCGTTGCCTGATGATACCGTTAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACGAAGGAGTTGCTTAGACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCATATTTTGAATCAATTTCACAAGGTGACAGCAAGACTGGAGCAAGCTCTGAATGAAATTTCACATGAAGCTCTTGACATATCCGATGAAGTCAAGGAGCAGGTTGACCTTGTTCTCTCTCAATTCAAAAGGGCTAGAGAAAGGAATGACACACAAGATGCTGAGCTGTATGTTAACCTGAACTCTCTCTATAACAACAGAGATGTTGCTACCGATCCTTCTGTCTTGAAAGGATTGGCTGAGAAGTTGCAATTGATGGATATAGCTGATCTTACTCAAGAATCTCTTGCTTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGAGGGAGATTTGAGAAAATGTCAATACTATTGAAGAGAATAAAAGATTTTATGCTAACTGAAAACCCTGAATTTGGTGCTTCTTCAAAAGAACAGAGTCATCCTCGCACTGGTGGACAAGCATCTGCTCGTAAGAAAGATATATCGTCCCTTCACATACCTGAAGACTTTCGATGCCCCATATCCCTAGATTTGATGAAAGATCCCGTCATTGTCTCTACAGGGCAGACCTATGAACGTGGTTTCATTGAGAAGTGGCTGGCAGATGGACACATGACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGCGAGGTCAATGGGATCGAACCACCACAACGTTCCAGCAGTTCTCAGCCAATTGAGTTGACTCCAGCTGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAAGCGATCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTAGCCATTGCTGAAGCTGGTGCAATCCCTCTTCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTACTTAACCTATCAATTTGTGACAATAATAAGAGAAGCATCATGGCCTGTAGGGCTGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCTACTCTTTTCAGTCTCTCTGTTGTAGACGAGTATAAAATAATGATCGGCGCATCGGGTGCCATTCTTCCACTTATTGCACTACTTAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTATTCAACTTATGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGCGGTGTTGTTTCCATACTAATGCAGCTGTTGACAGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCCAGCAATTCCGAAGGACGAGCTGCAATAGGAGCAGCCGAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAATAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTCGAAGCAAAGGAGCTTGGAGTGATTGGTTTGCTTATGGATATGGCAGAAAATGGAACAGACCGAGGTAAGCGAAAAGCAACCCAATTGCTCGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAATCTCAGTCTCAATCCCAGCCGTTAATACCACCACCTTCCGCAATCGGCAACGTTGAAAGCTGA | 1977 | 44.61 | MEEHNNGGSFRSLIDLVNDVASISDFRYAVRKQYCNLARRLKLLIPMFEEMRDMKQPLPDDTVKALASLKEALESTKELLRHGSEGSKIYLALEREHILNQFHKVTARLEQALNEISHEALDISDEVKEQVDLVLSQFKRARERNDTQDAELYVNLNSLYNNRDVATDPSVLKGLAEKLQLMDIADLTQESLALHEMVSASDGDPGGRFEKMSILLKRIKDFMLTENPEFGASSKEQSHPRTGGQASARKKDISSLHIPEDFRCPISLDLMKDPVIVSTGQTYERGFIEKWLADGHMTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSSSSQPIELTPAERSKYEALLHKLTSGNIEDKRSAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMACRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAESVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDMAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQSQPLIPPPSAIGNVES | 658 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19590109 | 19594660 | - | MELO3C013694.2.1 | Cme11g01284 | 341947 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01284 | 658 | MobiDBLite | consensus disorder prediction | 229 | 250 | - | - | |
Cme11g01284 | 658 | ProSiteProfiles | U-box domain profile. | 257 | 331 | IPR003613 | GO:0004842|GO:0016567 | |
Cme11g01284 | 658 | CDD | RING-Ubox_PUB | 262 | 304 | IPR045210 | - | |
Cme11g01284 | 658 | Pfam | U-box domain | 258 | 328 | IPR003613 | GO:0004842|GO:0016567 | |
Cme11g01284 | 658 | SMART | arm_5 | 545 | 585 | IPR000225 | GO:0005515 | |
Cme11g01284 | 658 | SMART | arm_5 | 504 | 544 | IPR000225 | GO:0005515 | |
Cme11g01284 | 658 | SMART | arm_5 | 422 | 462 | IPR000225 | GO:0005515 | |
Cme11g01284 | 658 | SMART | arm_5 | 381 | 421 | IPR000225 | GO:0005515 | |
Cme11g01284 | 658 | SMART | arm_5 | 463 | 503 | IPR000225 | GO:0005515 | |
Cme11g01284 | 658 | MobiDBLite | consensus disorder prediction | 230 | 244 | - | - | |
Cme11g01284 | 658 | Gene3D | - | 335 | 491 | IPR011989 | - | |
Cme11g01284 | 658 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 392 | 430 | IPR000225 | GO:0005515 | |
Cme11g01284 | 658 | Gene3D | - | 9 | 120 | IPR036537 | GO:0007166 | |
Cme11g01284 | 658 | Gene3D | - | 494 | 645 | IPR011989 | - | |
Cme11g01284 | 658 | PANTHER | U BOX DOMAIN-CONTAINING | 11 | 639 | - | - | |
Cme11g01284 | 658 | MobiDBLite | consensus disorder prediction | 633 | 649 | - | - | |
Cme11g01284 | 658 | SMART | Ubox_2 | 261 | 324 | IPR003613 | GO:0004842|GO:0016567 | |
Cme11g01284 | 658 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 11 | 639 | - | - | |
Cme11g01284 | 658 | Pfam | Armadillo/beta-catenin-like repeat | 464 | 502 | IPR000225 | GO:0005515 | |
Cme11g01284 | 658 | Pfam | Armadillo/beta-catenin-like repeat | 382 | 420 | IPR000225 | GO:0005515 | |
Cme11g01284 | 658 | Pfam | Armadillo/beta-catenin-like repeat | 545 | 584 | IPR000225 | GO:0005515 | |
Cme11g01284 | 658 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 331 | IPR013083 | - | |
Cme11g01284 | 658 | SUPERFAMILY | ARM repeat | 353 | 625 | IPR016024 | - | |
Cme11g01284 | 658 | SUPERFAMILY | RING/U-box | 252 | 332 | - | - | |
Cme11g01284 | 658 | MobiDBLite | consensus disorder prediction | 633 | 658 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme11g01284 | Cme12g00199 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g02175 | Cme-Chr3:28801416 | Cme11g01284 | Cme-Chr11:19590109 | 1.09E-48 | dispersed | |
Cme10g00643 | Cme-Chr10:4098358 | Cme11g01284 | Cme-Chr11:19590109 | 5.81E-48 | dispersed | |
Cme11g01052 | Cme-Chr11:15335584 | Cme11g01284 | Cme-Chr11:19590109 | 5.55E-156 | dispersed | |
Cme11g01284 | Cme-Chr11:19590109 | Cme12g01264 | Cme-Chr12:20726204 | 7.51E-94 | dispersed | |
Cme01g00947 | Cme-Chr1:11001499 | Cme11g01284 | Cme-Chr11:19590109 | 4.26E-08 | transposed | |
Cme03g00268 | Cme-Chr3:3445376 | Cme11g01284 | Cme-Chr11:19590109 | 5.05E-113 | transposed | |
Cme03g01477 | Cme-Chr3:24005512 | Cme11g01284 | Cme-Chr11:19590109 | 2.15E-32 | transposed | |
Cme04g00172 | Cme-Chr4:1298071 | Cme11g01284 | Cme-Chr11:19590109 | 8.19E-09 | transposed | |
Cme04g01429 | Cme-Chr4:20321918 | Cme11g01284 | Cme-Chr11:19590109 | 5.39E-88 | transposed | |
Cme05g01074 | Cme-Chr5:16603013 | Cme11g01284 | Cme-Chr11:19590109 | 3.82E-69 | transposed | |
Cme08g00355 | Cme-Chr8:2245658 | Cme11g01284 | Cme-Chr11:19590109 | 2.07E-59 | transposed | |
Cme09g01373 | Cme-Chr9:18986610 | Cme11g01284 | Cme-Chr11:19590109 | 3.63E-06 | transposed | |
Cme09g01399 | Cme-Chr9:19176931 | Cme11g01284 | Cme-Chr11:19590109 | 5.53E-126 | transposed | |
Cme10g00093 | Cme-Chr10:668933 | Cme11g01284 | Cme-Chr11:19590109 | 0 | transposed | |
Cme10g01508 | Cme-Chr10:18915283 | Cme11g01284 | Cme-Chr11:19590109 | 3.26E-156 | transposed | |
Cme12g00199 | Cme-Chr12:2053105 | Cme11g01284 | Cme-Chr11:19590109 | 0 | transposed | |
Cme11g01284 | Cme-Chr11:19590109 | Cme12g00198 | Cme-Chr12:2050619 | 4.07E-58 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01284 | - | - | csv:101221150 | 1206.82 |