Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01301 ATGGGTAACGGGATTGGGAAGCTCGGCGTTTGCTTCACCGGAATCAACGATGGTAGACGGCGTCCGGATATTTCCGTTCTGTTGACAAATCCACTAGATGAAGGTCTGGGGCACTCGTTTTGCTATGTCCGGCCGGATCCTTTGAGACTTTCATTATCAAAAGTTCATTCTGAAGAAACTACCACTTTCCGATCAATTTCCGGCGCCTCTGTAAGTGCAAATACATCAACACCTCTTTCTACTGCTCTTGTTGATCTGTATTCGTACAATAGCATTGATCGAGCGGCGGCTTTTGAGAGTTCCACTTCTTTTGCTTCAATCCCTTTACAACCGATCCCTAGAAACATGATTAATTCCGGTCCGATTTCGGGGAATTTCAGTGGAATCCCCTGTTCTGGGCCTTTGGAAAGAGGGTTTTTATCGGGTCCAATTGAACGAGGGTTTATGTCGGGTCCACTGGATCGGGGGATTTTCTCGGGTCCTCTTGATAATAATTCTACATCCAATGAATTTCAGAGGAGTTTTTCTCATGGTGCTGGGTTTAATTCCAGATCTAGATCAAGAAAAAGCCGGTTAATTCGAATTCTGAGAACCGCAATTTCAAAATCGATTCATCGAGGACAAAATTCCATTGTGGCTCCAATTAAACCGGTTAAAGAACCCGATTGGATCGTCTTACCCGAGAAGCATAACGAGAATTTGACTGTTAGTAGTTTGAATTTCAGTAGCGAAGGTAGTTTGGAAGATGATGATTCAATGGAGAGCCAAAATCTGCAGTGGGCTCAAGGAAAAGCAGGGGAAGATCGTGTTCATGTTGTTGTTTCTGAAGAACATGGGTGGGTTTTCGTTGGGATTTATGATGGATTTAACGGTCCTGATGCTCCCGATTATCTTTTGTCCAATTTATATTCCTATGTTCATAAAGAACTCAAAGGTTTGTTATGGGATGAAAAGCTCGATTCCACTGCTGTCGCGGCTCCGTCTGCTTCCCCTGTTCAGTCCGAAAATCCATGTTCAGAAACAAGAGATTTGGAGAGGAATCGAGTGAGTGATGCTTGTTCTCAGTGTGTAGAACAAGAGAATCATCCTTGTGTTAGTGGAGATGGGAATTCTGGATTGAAATCTAGGAAAAGGAAAGGTAAGAATTTAAGAGGAAAGTTTAGAGGAGCTGCTGAGAAATGGGAGGATAATCAACGGCGTTGGAAGTGCGAATGGGACCGGGAAAGACTAGAACTCGACCGGAGGTTAAAGGAGCAGTTAAATCGATCGGGATCGAATGGTTCCAGGTCGATTAATCATTCGGATGTTCTCAAAGCTCTGTCCCAAGCATTGAAGAAAACAGAGGAGTCTTATTTGGATATTGCAGACAAAATGCTTGATGAAAATCCCGAACTGGCTTTGATGGGTTCTTGTGTGCTTGTAATGCTTATGAAGGGAGATGATGTTTATGTTATGAATGTTGGTGATAGCCGAGCAGTTTTAGCGCAGAAGGCGGAGCCAGATTATTGGCTTGGGAAGATTCGACAAGACTTGGAGAGGATTAGTGAAGAGCCAGTTCATGATATTGAAGCATTAGAAGGTGATGGAGCATTCACTTCAGCAAACCTTACCGCTTTTCAGCTTTCCATGGATCATAGTACCAGTGTTGATGAGGAAGTGCAGAGAATAAAAAATGAACACCCTGATGATGCTGGTGCCGTGATGAACGATCGTGTCAAAGGCTCGTTGAAGGTTACTCGAGCGTTCGGGGCTGGTTTCCTCAAACAGCCAAAATGGAACAATGCATTATTGGAAATGTTCAGAATCGACTACGTTGGGAGATCGCCATACATCAATTGTTTACCATCTCTCTACCACCATAGATTGGGACCAAAAGACAGGTTTTTGATACTATCGTCAGATGGACTCTACCAGTACTTCACAAACGAAGAAGCTGTTTCCGAAGTTGAACTCTTCATCGCATTGCAACCCGAAGGAGACCCGGCTCAACATCTGGTTGAGTTACTGCTGTTTCGGGCTGCAAAAAGAGCTGGTATGGATTTCCATGAGTTACTCGAAATACCGCAGGGTGATCGGAGGAAGTATCATGACGATGTATCGATCATTGTAATTTCATTAGAAGGGAGGATATGGAGATCTTGTGTATAA 2148 43.72 MGNGIGKLGVCFTGINDGRRRPDISVLLTNPLDEGLGHSFCYVRPDPLRLSLSKVHSEETTTFRSISGASVSANTSTPLSTALVDLYSYNSIDRAAAFESSTSFASIPLQPIPRNMINSGPISGNFSGIPCSGPLERGFLSGPIERGFMSGPLDRGIFSGPLDNNSTSNEFQRSFSHGAGFNSRSRSRKSRLIRILRTAISKSIHRGQNSIVAPIKPVKEPDWIVLPEKHNENLTVSSLNFSSEGSLEDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSYVHKELKGLLWDEKLDSTAVAAPSASPVQSENPCSETRDLERNRVSDACSQCVEQENHPCVSGDGNSGLKSRKRKGKNLRGKFRGAAEKWEDNQRRWKCEWDRERLELDRRLKEQLNRSGSNGSRSINHSDVLKALSQALKKTEESYLDIADKMLDENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERISEEPVHDIEALEGDGAFTSANLTAFQLSMDHSTSVDEEVQRIKNEHPDDAGAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGRSPYINCLPSLYHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFIALQPEGDPAQHLVELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19824272 19827728 - MELO3C025919.2.1 Cme11g01301 341964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01301 715 CDD PP2Cc 432 706 IPR001932 -
Cme11g01301 715 ProSiteProfiles PPM-type phosphatase domain profile. 250 706 IPR001932 -
Cme11g01301 715 Gene3D - 228 711 IPR036457 -
Cme11g01301 715 Pfam Protein phosphatase 2C 430 655 IPR001932 -
Cme11g01301 715 PANTHER - 12 715 - -
Cme11g01301 715 SMART PP2C_4 251 704 IPR001932 -
Cme11g01301 715 SUPERFAMILY PP2C-like 264 707 IPR036457 -
Cme11g01301 715 PANTHER PROTEIN PHOSPHATASE 2C 12 715 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01301 Cme-Chr11:19824272 Cme08g00965 Cme-Chr8:6344338 2.08E-37 dispersed
Cme06g02487 Cme-Chr6:31828616 Cme11g01301 Cme-Chr11:19824272 5.88E-46 transposed
Cme11g01301 Cme-Chr11:19824272 Cme08g02405 Cme-Chr8:30953251 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01301 - - csv:101222644 1369.76