Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01308 ATGGGTGTCTGCTTAAGTACCAGAATCAAAGCTGAGAACTCATGTAATACAGGAGTGAATTCTAATGCTGTGAGTACTGATGGAAACGATATTGGTAGTACAAATAGCAAGATCAATTTGCTCTCAATGCCACCAACTCCACGAACTGAAGGCGAAATTTTGCAGTCTTCCAATTTGAAGAGCTTCAGTTTCACAGAGCTTAAAGCAGCCACCAGGAACTTTCGTCCTGATAGTGTGGTAGGAGAAGGTGGTTTTGGTTCTGTTTTCAAGGGTTGGATTGATGAGCATTCCTTTGCTGCAGCCAAACCTGGCACCGGAATGGTTATTGCAGTCAAAAGGCTTAACCAAGATGGTTTTCAAGGGCACAGAGAATGGTTGGCCGAAGTGAATTTTCTAGGCCAACTTTCTCACTGTCACCTTGTGAGGTTGGTTGGCTATTGCTTGGAGGATGAACACCGTTTGCTTGTTTACGAATTCATGCCTCGTGGGAGCTTGGAAAACCATTTGTTTCGAAGTAAGTATTTTCTTATCAGCAGCCCTTTGATTCCACTTAAGGAAAAGGACTTCATTAATTTTAGATCTTTTCATAATAATGTTCTAGGGGGATCCTATTTCCAACCTCTTTCTTGGAGCCTACGCTTAAAGGTTGCACTTGGTGCTGCAAAAGGGCTGGCCTTTCTCCACAGTGATGAAAGGAAAGTGATCTACCGTGACTTCAAGACGTCGAATATCCTACTAGACTCTAAATACAATGCCAAACTCTCAGATTTTGGGTTGGCTAAAGACGGCCCAACGGGTGATAAAAGCCACGTCTCGACTAGGGTGATGGGAACTTATGGATACGCGGCCCCGGAATATTTGGCTACAGGTCATCTAACTACTTGGAGTGATGTGTATAGCTTCGGAGTTGTCCTACTAGAAATATTATGTGGAAGGAGAGCAATTGACAAGAATCGACCAGCTAGAGAACACAATCTTGTGGAATGGGCAAAACCTTACCTTGCAAATAAACGTAAGATTTTTCGAATCATCGATAGTCGTCTTGAGGGCCAGTATTCATTGGATGGAGCCTACAAGGCATCTATGCTTGCGCTAAGATGCCTATCTATTAATCCCAAACTAAGACCAAACATGAATGATGTTGTAAAAGAACTAGAGCAACTACAGGATTCCACGTTGCCTACTAGCAACAGGAACTCAACCAATAATCGTCGTGCCCGAAGGCATAGTGCTGATGATGCCCGTAATCCAAATAACGCTCAAGCTTACCCCCGGCCTCCATTCCATCTCGACGTTTTCGTTACCGCTGAAGCTGAGATGGGGAAGGATGCATCAAAATTTTACTTGCTGCTTCAGTTTGTATTCTGTAAAGAAATTGCTCGGTCGGGATCACCTTTTTTTTTCTCTCTCTTCTTTTTTTGTGGTAGTTGGGAAGGGGAAAAGAAATTTAGATAG 1455 43.23 MGVCLSTRIKAENSCNTGVNSNAVSTDGNDIGSTNSKINLLSMPPTPRTEGEILQSSNLKSFSFTELKAATRNFRPDSVVGEGGFGSVFKGWIDEHSFAAAKPGTGMVIAVKRLNQDGFQGHREWLAEVNFLGQLSHCHLVRLVGYCLEDEHRLLVYEFMPRGSLENHLFRSKYFLISSPLIPLKEKDFINFRSFHNNVLGGSYFQPLSWSLRLKVALGAAKGLAFLHSDERKVIYRDFKTSNILLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTWSDVYSFGVVLLEILCGRRAIDKNRPAREHNLVEWAKPYLANKRKIFRIIDSRLEGQYSLDGAYKASMLALRCLSINPKLRPNMNDVVKELEQLQDSTLPTSNRNSTNNRRARRHSADDARNPNNAQAYPRPPFHLDVFVTAEAEMGKDASKFYLLLQFVFCKEIARSGSPFFFSLFFFCGSWEGEKKFR 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19865237 19870556 + MELO3C025912.2.1 Cme11g01308 341971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01308 484 SUPERFAMILY Protein kinase-like (PK-like) 47 385 IPR011009 -
Cme11g01308 484 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Cme11g01308 484 Gene3D Transferase(Phosphotransferase) domain 1 194 414 - -
Cme11g01308 484 PANTHER OS01G0588500 PROTEIN-RELATED 25 175 - -
Cme11g01308 484 PANTHER OS01G0588500 PROTEIN-RELATED 192 417 - -
Cme11g01308 484 Pfam Protein tyrosine and serine/threonine kinase 78 385 IPR001245 GO:0004672|GO:0006468
Cme11g01308 484 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Cme11g01308 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Cme11g01308 484 MobiDBLite consensus disorder prediction 389 423 - -
Cme11g01308 484 PANTHER KINASE 1B 192 417 - -
Cme11g01308 484 ProSiteProfiles Protein kinase domain profile. 74 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01308 484 PANTHER KINASE 1B 25 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01308 - - - csv:101203246 750.355
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme11g01308 Cme12g00173 CCT
Cme01g01148 Cme11g01308 CCT
Cme01g01148 Cme11g01308 ECH
Cme11g01308 Cme12g00173 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00471 Cme-Chr9:4497656 Cme11g01308 Cme-Chr11:19865237 0 dispersed
Cme09g00473 Cme-Chr9:4508895 Cme11g01308 Cme-Chr11:19865237 1.75E-151 dispersed
Cme10g00446 Cme-Chr10:2831318 Cme11g01308 Cme-Chr11:19865237 6.48E-158 dispersed
Cme11g01308 Cme-Chr11:19865237 Cme12g00173 Cme-Chr12:1683665 0 dispersed
Cme11g01306 Cme-Chr11:19855904 Cme11g01308 Cme-Chr11:19865237 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g292 . . . . . . . . . Cmo11g01785 . . . . . Cpe04g00630 . Bhi05g01584 . . . . . . Cla02g00348 . . . . . . Cone12ag1276 Cone8ag1330 Cone3ag1248 . . Csa07g00185 . Cme01g01148 . Blo13g00474 . . . . . Bma08g00718 . . . Cma11g01334 Cma19g00797 Car11g01412 . . . . . . . . . . . . . . . . . Lsi11g01284 . Chy01g00595 Cme11g01308
Vvi6g456 . Blo03g01236 . . . . . . Cmo13g00122 . Cma01g00608 Cma13g00125 Car01g00551 Car13g00094 . . Cpe20g00821 Bhi08g00600 . . . . . Lcy11g0178 Cla02g01962 . . . . . . Cone1ag0638 Cone5ag1142 Cone4ag1058 . Lsi02g01355 Csa06g01482 Chy11g01225 Cme11g01308 . . . . . Bpe11g00760 . . . Cmo02g00802 Cmo20g00437 Cma02g00800 Cma20g00399 Car02g00578 Car20g00348 . . Bhi10g00716 . . . . . . Cla03g00139 . . . . . . . Csa01g02422 . Cme12g00173
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000190 2 7 3 3 3 0 8 0 0 5 4 0 10 6 0 11 0 0 8 0 5 0 0 1 0 6 0 0 1 4 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65248 PF07714 PK_Tyr_Ser-Thr 2.40E-42 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01308 Cme_Chr11 FPKM 17.066505 19.777573 1.36403 1.504689 0.0 0.228408 0.0 9.379984 8.979489 10.219509