Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01314 ATGGCGACTCCAATTTCTCTCTGCATTGCCCTTCTCCTCTCATTTTCCCTCCTAATCGATGCCAGAATCCCCGGTGTTTACTCCGGCGGCCCATGGCAGAGCGCCCACGCCACATTCTACGGCGGCGCTGACGCTTCCGGCACAATGGGTGGAGCTTGTGGGTACGGAAATTTGTACAGCCAAGGCTATGGCGTTAACACGGCGGCGCTTAGTACTGCGCTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGTGCTAATGATCCAAGATGGTGCCATTCTGGTAGCCCCTCAATATTGATTACTGCTACTAATTTCTGCCCGCCGAACTACGCTCTTCCGAACGATAATGGCGGCTGGTGTAATCCCCCGAGGTCTCATTTTGATCTCGCGATGCCCATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCTCATACCGCCGAGTACCATGCCGTAAGCAAGGAGGAATCCGGTTCACCATTAACGGGTTTCGGTACTTCAATCTGGTTCTAATAACGAACGTGGCAGGGGCAGGGGATATCGTGAGGGTGAGTGTGAAAGGAACAAGAACAGGTTGGATGAGTTTAACAAGAAACTGGGGACAGAATTGGCAATCGAACGCCGTATTAGTGGGTCAGGCTCTTTCTTTTAGAGTTACCGGCAGTGACCGACGAACCTCGACGTCATGGAACATTGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTCTAA 777 52.38 MATPISLCIALLLSFSLLIDARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILITATNFCPPNYALPNDNGGWCNPPRSHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19942997 19944663 - MELO3C025907.2.1 Cme11g01314 341977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01314 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cme11g01314 258 PANTHER EXPANSIN-A15 7 257 IPR002963 GO:0009664
Cme11g01314 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Cme11g01314 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Cme11g01314 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Cme11g01314 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cme11g01314 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Cme11g01314 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Cme11g01314 258 Gene3D - 164 256 IPR036749 -
Cme11g01314 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cme11g01314 258 PANTHER EXPANSIN 7 257 - -
Cme11g01314 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cme11g01314 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cme11g01314 258 SUPERFAMILY Barwin-like endoglucanases 11 182 IPR036908 -
Cme11g01314 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Cme11g01314 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Cme11g01314 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Cme11g01314 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Cme11g01314 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Cme11g01314 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Cme11g01314 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Cme11g01314 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Cme11g01314 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Cme11g01314 258 Gene3D - 21 160 IPR036908 -
Cme11g01314 258 SMART dpbb_1 67 154 IPR007112 -
Cme11g01314 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme11g01314 Cme12g00171 CCT
Cme11g01314 Cme12g00171 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01262 Cme-Chr8:9104068 Cme11g01314 Cme-Chr11:19942997 4.44E-26 dispersed
Cme10g00899 Cme-Chr10:6397055 Cme11g01314 Cme-Chr11:19942997 7.15E-168 dispersed
Cme10g01247 Cme-Chr10:13121106 Cme11g01314 Cme-Chr11:19942997 3.03E-124 dispersed
Cme01g01912 Cme-Chr1:27548723 Cme11g01314 Cme-Chr11:19942997 2.48E-91 transposed
Cme09g00465 Cme-Chr9:4473432 Cme11g01314 Cme-Chr11:19942997 2.23E-154 transposed
Cme09g01018 Cme-Chr9:14292204 Cme11g01314 Cme-Chr11:19942997 3.55E-91 transposed
Cme11g01314 Cme-Chr11:19942997 Cme12g00171 Cme-Chr12:1665953 1.04E-131 wgd
Cme11g01314 Cme-Chr11:19942997 Cme08g02411 Cme-Chr8:30997262 9.91E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01314 - - csv:101203979 527.324