Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01366 CTTTATTCTTCCATCGCCCCCACACTCCGACATCACATTACCCCCCATTTCCTCTTTTCATTTTCATTTTCTTCATCTTCTTCCCCTTCCTCTTACAATGGCAGAAGCTCAATGCAAAACTCCCTAATTCCCTTTTTCTCATTCATCCCCATGGCGCCAATACTTCCCCCATCTCTCCCCAACAAACTCCTCCCTCTTTTCCTGATCCTCCTTCTCCACCTCGGCTGCTTCCTCCTCACCACCTCCCCCTCCCCCCGCCCCCGCCCCCGCCCCCGCCGCCGCCCCCGTCCTCCCCCCTCCTGCTTCAAGCCCCGCAACTCCCTATCCTCCTCATTCTCCTTTCTCAAACGAATCTTCTCCTCCAAAACCTGTACCATGGCAATCCAGACCGCTCCCCCTCCTTCCACTCCCGCTAGATCATCCCAGCACTCCATCCTCACCCTCGTCCAACCGGAGATTCCTCCTCCTTCCCCCGCCGTGGAGACTCATCCTCAGGATTCAGATATCACTGCGTCAGAGACTGATCAATTCTTCCCCCTTCGTAACGATATCTTCCCCTGTACTGCTTGCGGTGAGATTTTCCCCAAATCGCAACTCCTCGAACAGCATCAATCCATCAAACACGCCGTATCAGAGCTTGCCGATTCGGATTCCGGCAAGAATATCGTTCGGATTATTTTCGAAACCGGATGGAGGAGTAGAGAAAAAAGCCCCAAAATCCTTCGAATCTTGAAAATCCACAATAGTCAGAAGATTCTCTCCAGATTTGAAGAGTATAGAGAATCGGTGAAGGCGAAAGCGGCCAGACACGGTGGCGTTAAGCGCCGGGATGAGAGGTGCATTGCGGACGGGAACGAGCTCTTAAGGTTTCACTGTTCGACGTTTTTATGCGATTTGGGACAAAATGGAAACTCAAGTATTTGCGGGCAGCAATTTTGTAGTATTTGTGGGATAATTAAATCGGGATTTTCACACAAGTTGGACGGAATTTCGACGGTGGCGAGTAGCTGGAGGGCACACGTGGCGATCCCAGAGGACATCGAGGAGGAATTCAAGTTTCTCAACGTGAAACGGGCGATTTTGGTCTGTCGGGTTGTGGCGGGTCGGGTTGGGTGCGATGCCGATGAGCCGGAAAAAGACGGCGGAGGGTTTGATTCCGTGGTCGGAAGGAGTGGGAGTGGGGCCCAGTCCACGTTGGATGAAGAAGAGCTTTTGGTTTTTAATCCCAGGGCTGTGCTCCCCTGCTTCGCCATTGTATACGAAATCTGA 1269 52.32 LYSSIAPTLRHHITPHFLFSFSFSSSSSPSSYNGRSSMQNSLIPFFSFIPMAPILPPSLPNKLLPLFLILLLHLGCFLLTTSPSPRPRPRPRRRPRPPPSCFKPRNSLSSSFSFLKRIFSSKTCTMAIQTAPPPSTPARSSQHSILTLVQPEIPPPSPAVETHPQDSDITASETDQFFPLRNDIFPCTACGEIFPKSQLLEQHQSIKHAVSELADSDSGKNIVRIIFETGWRSREKSPKILRILKIHNSQKILSRFEEYRESVKAKAARHGGVKRRDERCIADGNELLRFHCSTFLCDLGQNGNSSICGQQFCSICGIIKSGFSHKLDGISTVASSWRAHVAIPEDIEEEFKFLNVKRAILVCRVVAGRVGCDADEPEKDGGGFDSVVGRSGSGAQSTLDEEELLVFNPRAVLPCFAIVYEI 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20463343 20464811 + MELO3C025864.2.1 Cme11g01366 342029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01366 422 PANTHER NUCLEIC ACID BINDING PROTEIN 69 420 - -
Cme11g01366 422 SUPERFAMILY ADP-ribosylation 211 421 - -
Cme11g01366 422 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 69 420 - -
Cme11g01366 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 213 IPR013087 -
Cme11g01366 422 ProSitePatterns Zinc finger C2H2 type domain signature. 187 208 IPR013087 -
Cme11g01366 422 Gene3D - 210 421 - -
Cme11g01366 422 MobiDBLite consensus disorder prediction 83 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00823 Cme-Chr9:10602865 Cme11g01366 Cme-Chr11:20463343 2.70E-64 dispersed
Cme09g01639 Cme-Chr9:21132942 Cme11g01366 Cme-Chr11:20463343 1.97E-33 dispersed
Cme11g01366 Cme-Chr11:20463343 Cme06g02044 Cme-Chr6:25731769 7.35E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42191 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01366 - - cmo:103502032 693.73