Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01387 ATGATGTGTAATGGTTGCAATAGGAAATCTGCAAGCCCTAACTTCGCGATGGACGGTGGATTTAAACGAGGGGGATTGGGATTTTGTATCTCTGTTTTGCTTGAATTTTCAGCTACAGATGATTTGATTGGATTTAGGAGTGCTGTTGAGGAAGATGGTCATGATATTGATGAGGCAAGTTTGTGGTATGGGAGGATTTTTGGTTCTAAAAAGATGGGGTATGAAGAAAGGACTCCTCTTATGGTTGCAGCCATGTTTGGGAGCCTGAATGTTCTGTCTTATATCCTTCACAGTGGTCGTGTCGATGTTAATAGAGCTTGTGGTTCAGATGGCGTAACGACTCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTCGTGGATCAGGTCGTCAAACTCTTGCTTGATGCTTCAGCTGATGTGAGTGCTGTCGATGCAAACGGTAACCGGCCTGGTGATTTGATTGCTCCTGATTTTACTTCAGCCTTTCATTCAAGGAAAAAAACATTACAACAATTGCTAAATGGTCATGAAGAAGGTCTTAGTTCATCTGAGGCAATATTTTACGAGAGAGAAACATTGGAGCCACTGGAGCTTTCAACCCTTCGAGCTTCTCGAGATGGGACGGAGAAGAAAGAGTATCCAGTCGATCTCTCACTTCCGGACATCAAGAACGGAATCTATAGCACGGATGAGTTCAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCTCATGATTGGACAGAGTGTCCTTTTGTTCACCCTGGCGAAAATGCAAGGAGGCGGGATCCGAGAAAATATCATTACAGCTGCGTCCCATGTCCGGAATTCAGAAAAGGAACATGTAGGCAAGGGGATGCCTGTGAATATGCTCATGGAATATTTGAATGTTGGCTCCATCCTGCTCAATATCGTACCCGTCTTTGTAAGGATGAAACTGGATGTACCAGAAAAGTCTGTTTCTTTGCTCACAAGCCAGAAGAGCTCCGCCCCTTGTATGCTTCAACCGGTTCTGCTGTACTGTCTCCAAGATCAATATGTGGTTCTTCACTAGACATCGCTTCGATCAGTCCACTTACCCTTGGTTCTCCTTCAGCTTTGATACCTCCTTCGTCAACCCCACCTTTAACTCCTTCTGGAGTTTCTTCTCCAATGGGTGGAACCGTGTGGCAGACTCAGTGTAATATTGCTCCCCCAACCTTGCACCTTCCAGGTAGCAGGCTAAAGGCTTCCTTGAGCGCAAGAGACGTGGATTTAGATGTCGAGTTACTTGGTCTCGAAAGTCAACGCCGTAGACAACAACAGCTAATGGATGAGATGTCCTGTCTACCTTCCCCTTCCAGATGGAACAATGGCATACCAACTCCTGCATCTTTTCCTTCCCCAAGGAGTAGAAATGGAGAACTGAATGGTCTTGGAGGCATGAAGCCAACTAAACTCGAGGACATTTTCGGGTCTGTAGATCCTGCAATTTTGCCTCAATTACAAGGACTTTCATTGGATTCTGTGGGATCTCAGGTACAATCCCCTTCTGGAATCCAGATGCGCCAAAGCCTGAATCAGTCTTTCCTCTCAAGCTATGGTAACAGCATTGGATCCCCTCCTCCAAGGTTGTCTCAACCATCCGTGTCTACTGCAGCCAGTGTTCTGAGTTCTAGAGCTGCTGCTTTTGCCAAGCGTAGCCAGAGCTTTATCGAACGTAGTATGGTGAGCCGCCACACGGGACTATCACCCCCAGCTACATCCACAACTACCATGCCTTTGAACCTGTCTGATTGGGGTTCGCCCGACGGAAAACTAGACTGGGGAATTCGTGGAGAAGAACTCAACAAGTTAAGGAAGTCTGCATCATTTGGGTTTCGAAACAATTGCACCAGTTCTCCAGTGACGTCCACGATGCACACTACCGCTCCCGAGCCAGATGTGTCCTGGGTTCAGTCCCTGGTGAAGGATGCTCCATCCGAAAACGCTGTGCAGTTGAGTATGGACGAGCAGCAGCAGCTACTTTGTCATATCAATAATGGCGATTCGAAGCAAATGTACATGGAACAGGAGCAGTTGGTTGCTTGA 2079 46.66 MMCNGCNRKSASPNFAMDGGFKRGGLGFCISVLLEFSATDDLIGFRSAVEEDGHDIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSLNVLSYILHSGRVDVNRACGSDGVTTLHCAVAGGSAVVDQVVKLLLDASADVSAVDANGNRPGDLIAPDFTSAFHSRKKTLQQLLNGHEEGLSSSEAIFYERETLEPLELSTLRASRDGTEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGTCRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSICGSSLDIASISPLTLGSPSALIPPSSTPPLTPSGVSSPMGGTVWQTQCNIAPPTLHLPGSRLKASLSARDVDLDVELLGLESQRRRQQQLMDEMSCLPSPSRWNNGIPTPASFPSPRSRNGELNGLGGMKPTKLEDIFGSVDPAILPQLQGLSLDSVGSQVQSPSGIQMRQSLNQSFLSSYGNSIGSPPPRLSQPSVSTAASVLSSRAAAFAKRSQSFIERSMVSRHTGLSPPATSTTTMPLNLSDWGSPDGKLDWGIRGEELNKLRKSASFGFRNNCTSSPVTSTMHTTAPEPDVSWVQSLVKDAPSENAVQLSMDEQQQLLCHINNGDSKQMYMEQEQLVA 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 20650326 20653297 + MELO3C025844.2.1 Cme11g01387 342050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01387 692 Gene3D - 272 334 - -
Cme11g01387 692 SMART ANK_2a 110 142 IPR002110 GO:0005515
Cme11g01387 692 SMART ANK_2a 75 105 IPR002110 GO:0005515
Cme11g01387 692 Gene3D - 40 175 IPR036770 -
Cme11g01387 692 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Cme11g01387 692 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Cme11g01387 692 PANTHER UNKEMPT FAMILY MEMBER 29 690 IPR045234 -
Cme11g01387 692 SUPERFAMILY Ankyrin repeat 72 150 IPR036770 -
Cme11g01387 692 MobiDBLite consensus disorder prediction 575 595 - -
Cme11g01387 692 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 29 690 - -
Cme11g01387 692 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Cme11g01387 692 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Cme11g01387 692 MobiDBLite consensus disorder prediction 446 468 - -
Cme11g01387 692 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Cme11g01387 692 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Cme11g01387 692 MobiDBLite consensus disorder prediction 575 594 - -
Cme11g01387 692 Pfam Ankyrin repeats (3 copies) 73 143 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02194 Cme-Chr4:29184502 Cme11g01387 Cme-Chr11:20650326 5.27E-163 dispersed
Cme07g00245 Cme-Chr7:1573011 Cme11g01387 Cme-Chr11:20650326 8.27E-55 dispersed
Cme10g01094 Cme-Chr10:9857173 Cme11g01387 Cme-Chr11:20650326 0 dispersed
Cme11g01387 Cme-Chr11:20650326 Cme02g00207 Cme-Chr2:1614273 2.06E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42192 PF12796 Ank_2 1.00E-06 CL0465 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01387 - - csv:101213761 1332.39