Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01443 ATGGAAAATAAGGCGAGTGTGATGGTTCAACGATATGAATTAGGGAGATTGCTTGGCCAAGGAACGTTTGCAAAAGTATATTATGCGAGGAATACAGGAAGTAATCAGAGTGTGGCCATTAAGGTGATTGATAAGGAAAAGATTACGAAGGCTTCACTAATCAATCAGATTAAGCGTGAAATATCTATTATGAGACTTGTTAGACATCCCAATATTCTTCATCTATATGAGGTTATGGCTACCAAGACTAAGATCTACTTTGTTTTGGAATATGCCAAAGGTGGTGAGCTCTTTGATAAGGTTGCTAAAGGGAGGCTGAAGGAGGACGTTGCTTGGAAATACTTTTATCAGTTAATTAATGCTGTTGATTTTTGTCACAGTAGGGGAGTGTATCACCGCGATATAAAGCCAGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCCGAATCCAGGCGTCAAGACGGTTTGCTACACACGACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGTTATGATGGTGCCAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCCTATTGGCAGGTTATCTCCCATTCCACAATTCAAATTTGATGGAAATGTATAGGAAGATCGGAAAAGCAGAGTATAAATGCCCTAGTTGGTTTCCTCGTGAAGTGCGGCGGCTGCTAAGCAGGATGCTTGATCCAGACCCCAATACTAGGACTTCAATAGCATTGATAAGACAAAGTTCTTGGTTCAAAAAGGGATTGAGGTCTAAGAATGCAAGAAGTGGGGCAGAAAGCAATGCTGTAGCGCCTGAAGATGCCACTGCTGGTTCTGGACCATCTGAGGGAAGTGTGGCAGCCGATGGAAATCGAGAGCCAGATAGACCTCCAACTTTGAATGCTTTCGATATCATCTCCCTTTCTGCTGGGTTCAATTTATGCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATTCTCTCAAAACTAGAAGAAATGGCTAAACTTCTTCGGTTTCGGGTACAAAAGAAGGAAGCAGGCCTATTAAAGTTTGAGGCACTAACAGAGGGGAAAAAGGGGGTATTATCCATTGATACAGAGATCTTTGAGGTTACTCCATCTTTTTATTTAGTGGAAATGAAAAAATCAAATGGAGACACATTGGAATATCAGAAGATATTGAAAGAAGACATTAGGCCAGCTCTAAAAGATATAGTATGGGTCTGGCGAGGAGAGCAAGAACAGCAGCAACAAAATCCTCAGCCTCAGCCTCTCCAGCCACAGGATCAAGTTCGAGATCCTTATCCAGAGCAAGTTGGTGCATTACAACCGCAATAG 1416 41.38 MENKASVMVQRYELGRLLGQGTFAKVYYARNTGSNQSVAIKVIDKEKITKASLINQIKREISIMRLVRHPNILHLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLKEDVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNLMEMYRKIGKAEYKCPSWFPREVRRLLSRMLDPDPNTRTSIALIRQSSWFKKGLRSKNARSGAESNAVAPEDATAGSGPSEGSVAADGNREPDRPPTLNAFDIISLSAGFNLCSLFEDNSKKKETLFTCRKPASVILSKLEEMAKLLRFRVQKKEAGLLKFEALTEGKKGVLSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALKDIVWVWRGEQEQQQQNPQPQPLQPQDQVRDPYPEQVGALQPQ 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21351973 21354381 + MELO3C026873.2.1 Cme11g01443 342106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01443 471 MobiDBLite consensus disorder prediction 277 310 - -
Cme11g01443 471 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01443 471 Pfam NAF domain 311 369 IPR004041 GO:0007165
Cme11g01443 471 PANTHER - 2 448 - -
Cme11g01443 471 MobiDBLite consensus disorder prediction 439 471 - -
Cme11g01443 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cme11g01443 471 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01443 471 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 10 2 448 - -
Cme11g01443 471 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cme11g01443 471 SUPERFAMILY Protein kinase-like (PK-like) 9 267 IPR011009 -
Cme11g01443 471 MobiDBLite consensus disorder prediction 439 454 - -
Cme11g01443 471 Gene3D Kinase associated domain 1, KA1 309 434 - -
Cme11g01443 471 Gene3D Transferase(Phosphotransferase) domain 1 2 295 - -
Cme11g01443 471 CDD CIPK_C 315 429 - -
Cme11g01443 471 CDD STKc_SnRK3 11 265 - -
Cme11g01443 471 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Cme11g01443 471 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01443 Cme-Chr11:21351973 Cme12g01283 Cme-Chr12:20898876 0 dispersed
Cme11g01443 Cme-Chr11:21351973 Cme11g01444 Cme-Chr11:21356838 1.16E-142 tandem
Cme11g01443 Cme-Chr11:21351973 Cme08g02120 Cme-Chr8:27044887 3.33E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65254 PF00069 Pkinase 1.90E-74 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01443 - - csv:101206404 881.322