Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01444 CCATCTCTTCATAATCATTTGTCAAAAAGCCTGAATTTTTCTGCCTTTCTTCTTTCTCTTTTCCTCTTATTTCCCCCTCGATCTCTGGCCCTCCGCCGCCCCATGCCGCCAGAGATCGAACCATCTTCCCCCGACAACAATGCCCTCTTCGGCAAATACGAGCTCGGCAAGCTCCTCGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCTCGCGACCTCCGCTCCGGCCATAGCGTCGCCGTCAAGGTTATCAACAAGAAGAAGATCTACGGCACAACCTTAATGTTCAACATTAAGCGAGAGATTGCCATTATGCGCCGCCTCCGTCATCCTAACATCGTTAAACTCCATGAGGTTCTCGCTACCAAATCTAAGATCTACTTCGTTATGGAGTTCGTCAAAGGCGGCGAGCTTTTCGCTAAGATCGCCAAGGGAAGATTCAGTGAAGATCTCAGCCGCAAATTCTTCCACCAGTTGATCTCCGCCGTTGGATTCTGTCATACGCGTGGGATTTATCACCGCGATCTGAAGCCGGAGAATCTTCTCGTTGATGAGAATGGGAATCTCAAGGTCTCTGACTTTGGTCTCAGTGCGGTAACCGAACAGATCCGTGCCGATGGCCTTTTGCACACTCTTTGTGGAACTCCGGCCTATGTTGCGCCGGAGATTTTGTCGAAAAAGGGATACGACGGTGCGAAGGTTGATGTGTGGTCGTGTGGTGTGATTCTTTTCGTGTTGAACGCCGGTTACCTTCCGTTCAACGATCCGAATCTCATGGCCATGTATAAGAAGATTTACAAGGGGGAATATCGGTGCCCTAAATGGATGTCGTCGGACCTCAAGAGGTTTCTATCGCGACTTCTGGATACGAATCCTGATTCGAGGATAACCATCGAAGAAATTCTTAATGATCCGTGGTTCAGAAAAGGAGGAAATCCAGAGATCAATTTCTACGATGATTACGAGATGAAATCGGAAGAGAAAGACGAATCTCCATCGATGAATTTGAATGCATTCGACATTATATCTTTCTCATCTGGATTAAACCTGTCTGGTTTGTTCGATAATTCACAAAACGTTGTGGATGACAGTGATCGATTCATATCGGCAGAGTCCCCGGAGAAGATCGTGGAAAAAATAGAGAAATTCGGTAAGGCTGAGGATTTGAAGGTGAAGAAACAGAAAGAATTTGGGGTTGAATTGGATGCGAAGAATCATGAATTGGTAATCGGAATAGAACTTTTCCGGTTAACGGACGAATTGGTGGTGGTGGAGATGAGAAGAAGATGTGGAGATTCAGAATCGTATAAGCAAATGTTGAAGAAGAAGCTGAAAATTCATCTAACCGGCAATGACGCGTCGACGTCGACTTCCCAATAA 1380 46.67 PSLHNHLSKSLNFSAFLLSLFLLFPPRSLALRRPMPPEIEPSSPDNNALFGKYELGKLLGCGAFAKVYHARDLRSGHSVAVKVINKKKIYGTTLMFNIKREIAIMRRLRHPNIVKLHEVLATKSKIYFVMEFVKGGELFAKIAKGRFSEDLSRKFFHQLISAVGFCHTRGIYHRDLKPENLLVDENGNLKVSDFGLSAVTEQIRADGLLHTLCGTPAYVAPEILSKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMAMYKKIYKGEYRCPKWMSSDLKRFLSRLLDTNPDSRITIEEILNDPWFRKGGNPEINFYDDYEMKSEEKDESPSMNLNAFDIISFSSGLNLSGLFDNSQNVVDDSDRFISAESPEKIVEKIEKFGKAEDLKVKKQKEFGVELDAKNHELVIGIELFRLTDELVVVEMRRRCGDSESYKQMLKKKLKIHLTGNDASTSTSQ 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21356838 21358493 - MELO3C027266.2.1 Cme11g01444 342107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01444 459 ProSiteProfiles NAF domain profile. 331 355 IPR018451 GO:0007165
Cme11g01444 459 SUPERFAMILY Protein kinase-like (PK-like) 50 316 IPR011009 -
Cme11g01444 459 Gene3D Kinase associated domain 1, KA1 332 450 - -
Cme11g01444 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Cme11g01444 459 ProSiteProfiles Protein kinase domain profile. 53 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01444 459 CDD CIPK_C 337 448 - -
Cme11g01444 459 Pfam NAF domain 335 393 IPR004041 GO:0007165
Cme11g01444 459 Gene3D Phosphorylase Kinase; domain 1 40 134 - -
Cme11g01444 459 Gene3D Transferase(Phosphotransferase) domain 1 135 312 - -
Cme11g01444 459 Pfam Protein kinase domain 53 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01444 459 PANTHER - 42 454 - -
Cme11g01444 459 SMART serkin_6 53 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01444 459 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 42 454 - -
Cme11g01444 459 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00555 Cme-Chr6:3506603 Cme11g01444 Cme-Chr11:21356838 3.45E-122 dispersed
Cme08g02120 Cme-Chr8:27044887 Cme11g01444 Cme-Chr11:21356838 1.73E-180 dispersed
Cme11g01444 Cme-Chr11:21356838 Cme05g01830 Cme-Chr5:27161860 3.34E-155 dispersed
Cme11g01443 Cme-Chr11:21351973 Cme11g01444 Cme-Chr11:21356838 1.16E-142 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65255 PF00069 Pkinase 2.80E-72 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01444 - K12761 csv:101204001 809.675