Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01444 | CCATCTCTTCATAATCATTTGTCAAAAAGCCTGAATTTTTCTGCCTTTCTTCTTTCTCTTTTCCTCTTATTTCCCCCTCGATCTCTGGCCCTCCGCCGCCCCATGCCGCCAGAGATCGAACCATCTTCCCCCGACAACAATGCCCTCTTCGGCAAATACGAGCTCGGCAAGCTCCTCGGCTGCGGCGCCTTTGCCAAGGTCTACCATGCTCGCGACCTCCGCTCCGGCCATAGCGTCGCCGTCAAGGTTATCAACAAGAAGAAGATCTACGGCACAACCTTAATGTTCAACATTAAGCGAGAGATTGCCATTATGCGCCGCCTCCGTCATCCTAACATCGTTAAACTCCATGAGGTTCTCGCTACCAAATCTAAGATCTACTTCGTTATGGAGTTCGTCAAAGGCGGCGAGCTTTTCGCTAAGATCGCCAAGGGAAGATTCAGTGAAGATCTCAGCCGCAAATTCTTCCACCAGTTGATCTCCGCCGTTGGATTCTGTCATACGCGTGGGATTTATCACCGCGATCTGAAGCCGGAGAATCTTCTCGTTGATGAGAATGGGAATCTCAAGGTCTCTGACTTTGGTCTCAGTGCGGTAACCGAACAGATCCGTGCCGATGGCCTTTTGCACACTCTTTGTGGAACTCCGGCCTATGTTGCGCCGGAGATTTTGTCGAAAAAGGGATACGACGGTGCGAAGGTTGATGTGTGGTCGTGTGGTGTGATTCTTTTCGTGTTGAACGCCGGTTACCTTCCGTTCAACGATCCGAATCTCATGGCCATGTATAAGAAGATTTACAAGGGGGAATATCGGTGCCCTAAATGGATGTCGTCGGACCTCAAGAGGTTTCTATCGCGACTTCTGGATACGAATCCTGATTCGAGGATAACCATCGAAGAAATTCTTAATGATCCGTGGTTCAGAAAAGGAGGAAATCCAGAGATCAATTTCTACGATGATTACGAGATGAAATCGGAAGAGAAAGACGAATCTCCATCGATGAATTTGAATGCATTCGACATTATATCTTTCTCATCTGGATTAAACCTGTCTGGTTTGTTCGATAATTCACAAAACGTTGTGGATGACAGTGATCGATTCATATCGGCAGAGTCCCCGGAGAAGATCGTGGAAAAAATAGAGAAATTCGGTAAGGCTGAGGATTTGAAGGTGAAGAAACAGAAAGAATTTGGGGTTGAATTGGATGCGAAGAATCATGAATTGGTAATCGGAATAGAACTTTTCCGGTTAACGGACGAATTGGTGGTGGTGGAGATGAGAAGAAGATGTGGAGATTCAGAATCGTATAAGCAAATGTTGAAGAAGAAGCTGAAAATTCATCTAACCGGCAATGACGCGTCGACGTCGACTTCCCAATAA | 1380 | 46.67 | PSLHNHLSKSLNFSAFLLSLFLLFPPRSLALRRPMPPEIEPSSPDNNALFGKYELGKLLGCGAFAKVYHARDLRSGHSVAVKVINKKKIYGTTLMFNIKREIAIMRRLRHPNIVKLHEVLATKSKIYFVMEFVKGGELFAKIAKGRFSEDLSRKFFHQLISAVGFCHTRGIYHRDLKPENLLVDENGNLKVSDFGLSAVTEQIRADGLLHTLCGTPAYVAPEILSKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMAMYKKIYKGEYRCPKWMSSDLKRFLSRLLDTNPDSRITIEEILNDPWFRKGGNPEINFYDDYEMKSEEKDESPSMNLNAFDIISFSSGLNLSGLFDNSQNVVDDSDRFISAESPEKIVEKIEKFGKAEDLKVKKQKEFGVELDAKNHELVIGIELFRLTDELVVVEMRRRCGDSESYKQMLKKKLKIHLTGNDASTSTSQ | 459 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21356838 | 21358493 | - | MELO3C027266.2.1 | Cme11g01444 | 342107 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01444 | 459 | ProSiteProfiles | NAF domain profile. | 331 | 355 | IPR018451 | GO:0007165 | |
Cme11g01444 | 459 | SUPERFAMILY | Protein kinase-like (PK-like) | 50 | 316 | IPR011009 | - | |
Cme11g01444 | 459 | Gene3D | Kinase associated domain 1, KA1 | 332 | 450 | - | - | |
Cme11g01444 | 459 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 171 | 183 | IPR008271 | GO:0004672|GO:0006468 | |
Cme11g01444 | 459 | ProSiteProfiles | Protein kinase domain profile. | 53 | 307 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01444 | 459 | CDD | CIPK_C | 337 | 448 | - | - | |
Cme11g01444 | 459 | Pfam | NAF domain | 335 | 393 | IPR004041 | GO:0007165 | |
Cme11g01444 | 459 | Gene3D | Phosphorylase Kinase; domain 1 | 40 | 134 | - | - | |
Cme11g01444 | 459 | Gene3D | Transferase(Phosphotransferase) domain 1 | 135 | 312 | - | - | |
Cme11g01444 | 459 | Pfam | Protein kinase domain | 53 | 307 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01444 | 459 | PANTHER | - | 42 | 454 | - | - | |
Cme11g01444 | 459 | SMART | serkin_6 | 53 | 307 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01444 | 459 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 14 | 42 | 454 | - | - | |
Cme11g01444 | 459 | ProSitePatterns | Protein kinases ATP-binding region signature. | 59 | 82 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g00555 | Cme-Chr6:3506603 | Cme11g01444 | Cme-Chr11:21356838 | 3.45E-122 | dispersed | |
Cme08g02120 | Cme-Chr8:27044887 | Cme11g01444 | Cme-Chr11:21356838 | 1.73E-180 | dispersed | |
Cme11g01444 | Cme-Chr11:21356838 | Cme05g01830 | Cme-Chr5:27161860 | 3.34E-155 | dispersed | |
Cme11g01443 | Cme-Chr11:21351973 | Cme11g01444 | Cme-Chr11:21356838 | 1.16E-142 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65255 | PF00069 | Pkinase | 2.80E-72 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01444 | - | K12761 | csv:101204001 | 809.675 |