Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01446 ATGTTAAAGAATACTCGAGCTGGGAATCCCAGCAGCAAACTCCATGATTGCAAATCAGAATTTGGGTACGTCGAGACCGATCCGACATGTCGTTACGGCCGTTTCGAAGAAGTTTTGGGAAAAGGGGCCATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATAGAGGTGGCGTGGAGTCAGGTGAAACTCAATGAGGTCCTCCGATCGCCCGAGGATTTGGAACGGCTGTATTCAGAGGTTCATCTACTTAGCACACTTAAGCACGAATCGATCATGCGATTCTACACCTCATGGATTGATGTTGATCACAAAACCTTCAACTTCATTACTGAACTGTTTACTTCTGGAACGCTCAGAGAATACGGAAAGAAATATAGGCGAGTTGATATCAGAGCCATTAAGAGCTGGGCGAGGCAGATTCTACAGGGACTCATTTATTTGCACGAACATGACCCTCCAATAATACACAGAGATCTGAAGTGTGATAATATCTTTGTGAATGGCCATCTTGGGCAAGTTAAGATTGGTGACTTGGGGCTTGCAGCTATACTTCATGGTTCCAGATCTGCTCACAGTGTTATAGGCACACCAGAGTTTATGGCGCCGGAATTGTACGAGGAGAATTACAATGAGCTAGTTGATGTCTACTCGTTCGGCATGTGTGTCCTAGAGATGCTTACTTCGGAGTACCCTTATAGCGAGTGTTCTAATCCTGCACAAATTTACAAGAAAGTCACGTCGGGGAAGCTACCAGCAGCATTATACAAGATTCAAGATGTGGATGCACAGAGATTTATTAAGAAATGCTTGGTGCCGGTTTCGATGAGGGCGTCTGCGAAGGAACTCTTGGCTGATCCTTTTCTCAAAGTTGATGGAAATAGACCTTCATCGGTGGGGAGGACTCAAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAATTTTCACTTGGGTGAAGGTTTAAGCAGGACAAACATGACGATCACAGGGAAGCTGAATCCCGAAGACGATACCCTCTTTCTTAGAGTTCAGACTGCCGATAAAGATGGCTCTCTTAGGAACATATACTTCCCTTTCGACATAGTTAACGACACAGCATTAGATGTGGCAATGGAGATGGTGAAAGAATTGGAGATCTCTGATTGGGAGCCGTTTGAAATTGCAGACATGATTGAAGGTGAGATATCAGCTCTGGTTCCAAACTGGAATAGAAGTGAGTTAACCAACCATAGCCTCAGCTTCAGCTATGCAGAAGAAGATGATAATGTATCTCATCATACTTTCCGCTCGGTCTCGTCGTCGTCCCAAGCAACAACTTTGGGTCTTATCTCCTCCCCAAGAACAAACCAAAACATTTCAAATGGTTTTAGTTGGTTTCCAGATGATACGCTTGATGATAGCAGTTCACAATGCTCATCAGTGTCGGGAAAATACTCCAACTTGAATTACATCAGCAGCGAGGAGTACGAGACCAGCATGAGTTCAGTCCTGATAGATCAACATAACAACATCAATAAGATTCACAATTCCTCAAGATTTTGTCCTATTGAGAACCGAAAAAACAAGGATTTTTTGGCTCAACTTCTATACAAGCAGAGCCAATGTGCGATAGCAGGGTCGTCTCAAGGAGTTGCCTCTTGTCGCAAAGACAAGAGAGGAACAGATGGTCGTAAATTAACAAGGAACAGATCACTAGTAGATGTACATAGCCAATTGCTGCATCGTTCTTTAGTGGAGGAAGTGAATAGAAGACGGTTATTCAAGACAGTTGGAGCAGTTGAAAGCATAGGCTTTCAAGCACCTTGTGAGGTTTCTTCCAGCAAAAAGGTCTCGAGTAGGCAACCGATTGGGAACCGAAGTAGTGATGTAGCAAGAACGAGGAGAAACGACGATATTATATGGCAAGATGTTGGAAGGAGAACATGA 1938 43.76 MLKNTRAGNPSSKLHDCKSEFGYVETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLERLYSEVHLLSTLKHESIMRFYTSWIDVDHKTFNFITELFTSGTLREYGKKYRRVDIRAIKSWARQILQGLIYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEENYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIQDVDAQRFIKKCLVPVSMRASAKELLADPFLKVDGNRPSSVGRTQNQKPFLNAKEMENFHLGEGLSRTNMTITGKLNPEDDTLFLRVQTADKDGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELTNHSLSFSYAEEDDNVSHHTFRSVSSSSQATTLGLISSPRTNQNISNGFSWFPDDTLDDSSSQCSSVSGKYSNLNYISSEEYETSMSSVLIDQHNNINKIHNSSRFCPIENRKNKDFLAQLLYKQSQCAIAGSSQGVASCRKDKRGTDGRKLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKKVSSRQPIGNRSSDVARTRRNDDIIWQDVGRRT 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21379247 21383364 - MELO3C026875.2.1 Cme11g01446 342109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01446 645 SUPERFAMILY Protein kinase-like (PK-like) 35 437 IPR011009 -
Cme11g01446 645 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 625 - -
Cme11g01446 645 SMART serkin_6 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01446 645 CDD STKc_WNK 31 291 - -
Cme11g01446 645 ProSiteProfiles Protein kinase domain profile. 33 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01446 645 Gene3D Phosphorylase Kinase; domain 1 17 114 - -
Cme11g01446 645 Gene3D Transferase(Phosphotransferase) domain 1 116 296 - -
Cme11g01446 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Cme11g01446 645 Pfam Protein kinase domain 36 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01446 645 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK4-RELATED 15 625 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01561 Cme-Chr1:20725952 Cme11g01446 Cme-Chr11:21379247 1.53E-165 transposed
Cme02g01435 Cme-Chr2:20933388 Cme11g01446 Cme-Chr11:21379247 3.04E-165 transposed
Cme05g01762 Cme-Chr5:26633620 Cme11g01446 Cme-Chr11:21379247 1.03E-168 transposed
Cme06g00078 Cme-Chr6:495461 Cme11g01446 Cme-Chr11:21379247 2.73E-129 transposed
Cme06g02799 Cme-Chr6:35203988 Cme11g01446 Cme-Chr11:21379247 5.02E-114 transposed
Cme09g01869 Cme-Chr9:22863296 Cme11g01446 Cme-Chr11:21379247 1.00E-135 transposed
Cme11g00927 Cme-Chr11:12867198 Cme11g01446 Cme-Chr11:21379247 1.18E-111 transposed
Cme12g01658 Cme-Chr12:23634019 Cme11g01446 Cme-Chr11:21379247 6.93E-162 transposed
Cme11g01446 Cme-Chr11:21379247 Cme08g02113 Cme-Chr8:26846230 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65256 PF00069 Pkinase 4.40E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01446 K08867 - csv:101203757 1233.78