Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01471 ATGCCTAAATTAGGAAAACTACAAACAAGACTGCCTGGTTCTTTGTCTGTGGCTGAGACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTACCGATGAAGCAAAACTTGCTCGTAGAGTTCCAGCCAAGGGATCGAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGAGCACCGAAAAGAGGAAGTCGGCTCTGGTTGGGTACATTTCCAACTGCGATTGATGCTGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCAATTTAGCTCGCCTCAATTTTCCCAATGTCTCAATTCCAACCTTGCTAAAAGAAAAAGAATTATCAACAAAGGATTCTCCTGATGAAATCAAGAGGTCTTCACTCTCTTTTTTAGGTTCAACTTCACTTAGTCTGAGTTCTGAATCCACAATAACATCAGATCACTCTGAGGATTGTGCAGTTGAAGATGTCTAG 540 42.78 MPKLGKLQTRLPGSLSVAETLAKWKDYNDHLDSCTDEAKLARRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPKRGSRLWLGTFPTAIDAALAYDEAARAMYGNLARLNFPNVSIPTLLKEKELSTKDSPDEIKRSSLSFLGSTSLSLSSESTITSDHSEDCAVEDV 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21648965 21651352 - MELO3C019763.2.1 Cme11g01471 342134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01471 179 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Cme11g01471 179 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Cme11g01471 179 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Cme11g01471 179 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 151 - -
Cme11g01471 179 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 151 - -
Cme11g01471 179 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Cme11g01471 179 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Cme11g01471 179 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Cme11g01471 179 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Cme11g01471 179 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00283 Cme-Chr3:3598393 Cme11g01471 Cme-Chr11:21648965 4.53E-47 dispersed
Cme11g01471 Cme-Chr11:21648965 Cme08g00782 Cme-Chr8:5224298 8.79E-25 dispersed
Cme11g01471 Cme-Chr11:21648965 Cme08g02169 Cme-Chr8:27722698 1.49E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42196 PF00847 AP2 4.80E-14 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01471 - - csv:101207656 292.352