Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01471 | ATGCCTAAATTAGGAAAACTACAAACAAGACTGCCTGGTTCTTTGTCTGTGGCTGAGACTCTTGCAAAATGGAAAGATTACAATGATCACCTTGATTCATGTACCGATGAAGCAAAACTTGCTCGTAGAGTTCCAGCCAAGGGATCGAAGAAAGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGAGCACCGAAAAGAGGAAGTCGGCTCTGGTTGGGTACATTTCCAACTGCGATTGATGCTGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCAATTTAGCTCGCCTCAATTTTCCCAATGTCTCAATTCCAACCTTGCTAAAAGAAAAAGAATTATCAACAAAGGATTCTCCTGATGAAATCAAGAGGTCTTCACTCTCTTTTTTAGGTTCAACTTCACTTAGTCTGAGTTCTGAATCCACAATAACATCAGATCACTCTGAGGATTGTGCAGTTGAAGATGTCTAG | 540 | 42.78 | MPKLGKLQTRLPGSLSVAETLAKWKDYNDHLDSCTDEAKLARRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPKRGSRLWLGTFPTAIDAALAYDEAARAMYGNLARLNFPNVSIPTLLKEKELSTKDSPDEIKRSSLSFLGSTSLSLSSESTITSDHSEDCAVEDV | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21648965 | 21651352 | - | MELO3C019763.2.1 | Cme11g01471 | 342134 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01471 | 179 | CDD | AP2 | 65 | 125 | IPR001471 | GO:0003700|GO:0006355 | |
Cme11g01471 | 179 | Gene3D | AP2/ERF domain | 66 | 125 | IPR036955 | GO:0003700|GO:0006355 | |
Cme11g01471 | 179 | Pfam | AP2 domain | 65 | 115 | IPR001471 | GO:0003700|GO:0006355 | |
Cme11g01471 | 179 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 10 | 151 | - | - | |
Cme11g01471 | 179 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 10 | 151 | - | - | |
Cme11g01471 | 179 | PRINTS | Ethylene responsive element binding protein signature | 67 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Cme11g01471 | 179 | PRINTS | Ethylene responsive element binding protein signature | 89 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Cme11g01471 | 179 | ProSiteProfiles | AP2/ERF domain profile. | 66 | 123 | IPR001471 | GO:0003700|GO:0006355 | |
Cme11g01471 | 179 | SUPERFAMILY | DNA-binding domain | 66 | 123 | IPR016177 | GO:0003677 | |
Cme11g01471 | 179 | SMART | rav1_2 | 66 | 129 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g00283 | Cme-Chr3:3598393 | Cme11g01471 | Cme-Chr11:21648965 | 4.53E-47 | dispersed | |
Cme11g01471 | Cme-Chr11:21648965 | Cme08g00782 | Cme-Chr8:5224298 | 8.79E-25 | dispersed | |
Cme11g01471 | Cme-Chr11:21648965 | Cme08g02169 | Cme-Chr8:27722698 | 1.49E-49 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42196 | PF00847 | AP2 | 4.80E-14 | CL0081 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01471 | - | - | csv:101207656 | 292.352 |