Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01505 ATGAAATTCGAAGAGCAGAACCAGAATCATCATCACTCCAAACAGATATGCAGAACCTTTCAAGTGGATACAATCGATCACCATCATACTATTTCCTCGCTACTCGCAATGGAGGCTTCCGAATACTGCGATAAGGATGATGATGATGGCCTCTATATCCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGTTTCCCTGACTCTCCTAACTTCTCCTTCCTCCAAACCCTAGCTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGACTTCCTCAAGTCTAACGGGATTAGATTGTTTCAATTTGGAATCGAAAGCTATAAGGAGCCTTTCGTGAACATCCCAGATGATATTATTCGTGAAGCACTGAAAGTTGTACTTGACGATAGAAATCATCCACTTCTCATACATTGCAAAAGAGGAAAGCATCGGACAGGTTGTCTTGTGGGATGTCTGAGAAAACTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTATCAGAGATTTGCAGCTGCGAAAGCAAGAATTTCAGACCAGAGATGA 579 43.52 MKFEEQNQNHHHSKQICRTFQVDTIDHHHTISSLLAMEASEYCDKDDDDGLYIPPLNFSMVDNGIFRSGFPDSPNFSFLQTLALRSIICLCPEPYPEHNMDFLKSNGIRLFQFGIESYKEPFVNIPDDIIREALKVVLDDRNHPLLIHCKRGKHRTGCLVGCLRKLQRWCLTSVFDEYQRFAAAKARISDQR 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22145118 22149105 - MELO3C019734.2.1 Cme11g01505 342168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01505 192 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 4 192 - -
Cme11g01505 192 ProSitePatterns Tyrosine specific protein phosphatases active site. 147 157 IPR016130 GO:0016311|GO:0016791
Cme11g01505 192 ProSiteProfiles Dual specificity protein phosphatase domain profile. 57 192 IPR020422 GO:0006470|GO:0008138
Cme11g01505 192 Pfam Tyrosine phosphatase family 52 191 IPR004861 -
Cme11g01505 192 PANTHER TYROSINE-PROTEIN PHOSPHATASE 4 192 - -
Cme11g01505 192 PRINTS Plant and fungal dual specificity phosphatase signature 125 139 IPR020428 GO:0016791
Cme11g01505 192 PRINTS Plant and fungal dual specificity phosphatase signature 89 102 IPR020428 GO:0016791
Cme11g01505 192 PRINTS Plant and fungal dual specificity phosphatase signature 52 69 IPR020428 GO:0016791
Cme11g01505 192 PRINTS Plant and fungal dual specificity phosphatase signature 108 122 IPR020428 GO:0016791
Cme11g01505 192 CDD PFA-DSP_Siw14 51 192 - -
Cme11g01505 192 Gene3D Protein tyrosine phosphatase superfamily 52 192 IPR029021 -
Cme11g01505 192 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 191 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00915 Cme-Chr2:12679571 Cme11g01505 Cme-Chr11:22145118 2.48E-74 transposed
Cme11g01505 Cme-Chr11:22145118 Cme05g00326 Cme-Chr5:2406592 9.16E-45 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01505 K18045 - csv:101222170 389.423