Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01510 | ATGCCAGATAATCTGCAAGTTCAGAGGCATGATGTTCCTAACCAATCCCCTGATATCTCAGAGGCGCTTTGGCGGTTGGAAATCAGTGATAATCAAGATGGAGGTGATGCGGCCGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCAGATTGCTTATATTATATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGATTCAATCATCCTGTTTACGTTGGTCAGGGTGCTCTGTATAATGGGGAACTTCCAGAAAGAATTGGGCAACCCGACTGTGAGTACTTTCTGAAGACAGGGACCTGTAAATATGGAGGGTCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAACATTTTAGGCCTTCCCATGAGACAGGAAGAAAAGTCGTGCCCTTATTATTTGCGCACTGGATCGTGTAAATTTGGAGTTTCGTGTAAGTTCAATCATCCTCAGCCATCACCAGTTGGAAATTCGTTACCTCAAGCTAGACCTGGTGCGTTGGGTTCTGGAGGCACTCCATTCATGCCTTCATCTGGTGTGCCATATACTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGTCCATGTGTACAAGGCCAACAATCTTATGTGCCTGTTCTGGTTTCTCCATCACAGGGTGCTATAGCTGCTCAAGACTGGAACACTTACGTGAGCAATGTCAATCCTATTCTTCCGAATCTTGGTTACAACTCTATCAATTTGGAGGACTCATATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAACACTACCTGATCGACCTGATCAACCAGAATGTCGTTATTTCATGAACAATGGCACATGCAAATATGGTTCTGATTGTAAATTCCATCATCCGAAACAAAGAATTGCACAATCAGCAACGAATGCACTGGGACTTCCTTCAAGACCCGGACAAGCTATATGTTCATACTACAATATGTATGGGCTGTGCAAGTATGGGCCAAGTTGTAAATTTGACCACCCATCTCCAACATATCCTTATAATTATGGTTTCACTCTGCCTCTGCTTGATTCGTCTTTTATAAAGTATCCCAGCAACAACTTCACAATGTCCTCACATGAGACGTTGCCCGGGATGTTATCTAAATCTTCTGAATGGGTTCAGAAAGCTGATCCATCGAACAAGCGGCGAACTACCGATTCAAAAGTCATAGTAGACAGCACAGGCGAAGAGGCAACCTCTGTTTCATGCTCATTACCGGGTGGTTCAGAAAGTTTACAAGATCAATGA | 1302 | 44.16 | MPDNLQVQRHDVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVGQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNSLPQARPGALGSGGTPFMPSSGVPYTGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVSNVNPILPNLGYNSINLEDSYSNGQLALSTSTPTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAICSYYNMYGLCKYGPSCKFDHPSPTYPYNYGFTLPLLDSSFIKYPSNNFTMSSHETLPGMLSKSSEWVQKADPSNKRRTTDSKVIVDSTGEEATSVSCSLPGGSESLQDQ | 433 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 22300788 | 22304929 | + | MELO3C019730.2.1 | Cme11g01510 | 342173 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01510 | 433 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 | 14 | 405 | - | - | |
Cme11g01510 | 433 | MobiDBLite | consensus disorder prediction | 387 | 433 | - | - | |
Cme11g01510 | 433 | SUPERFAMILY | CCCH zinc finger | 93 | 117 | IPR036855 | GO:0046872 | |
Cme11g01510 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | PANTHER | PROTEIN PHOSPHATASE RELATED | 14 | 405 | - | - | |
Cme11g01510 | 433 | SUPERFAMILY | CCCH zinc finger | 322 | 347 | IPR036855 | GO:0046872 | |
Cme11g01510 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 116 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | SUPERFAMILY | CCCH zinc finger | 280 | 304 | IPR036855 | GO:0046872 | |
Cme11g01510 | 433 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 137 | 160 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 321 | 345 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 278 | 303 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 115 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 72 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | Gene3D | - | 45 | 121 | - | - | |
Cme11g01510 | 433 | Gene3D | - | 274 | 351 | - | - | |
Cme11g01510 | 433 | MobiDBLite | consensus disorder prediction | 409 | 433 | - | - | |
Cme11g01510 | 433 | Gene3D | - | 122 | 169 | - | - | |
Cme11g01510 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 133 | 161 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | SMART | c3hfinal6 | 319 | 346 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | SMART | c3hfinal6 | 276 | 303 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | SMART | c3hfinal6 | 135 | 160 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | SMART | c3hfinal6 | 88 | 115 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | MobiDBLite | consensus disorder prediction | 393 | 408 | - | - | |
Cme11g01510 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 276 | 304 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | SUPERFAMILY | CCCH zinc finger | 51 | 73 | IPR036855 | GO:0046872 | |
Cme11g01510 | 433 | ProSiteProfiles | Zinc finger C3H1-type profile. | 319 | 347 | IPR000571 | GO:0046872 | |
Cme11g01510 | 433 | SUPERFAMILY | CCCH zinc finger | 132 | 161 | IPR036855 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g00709 | Cme-Chr6:4618750 | Cme11g01510 | Cme-Chr11:22300788 | 2.43E-74 | dispersed | |
Cme11g01510 | Cme-Chr11:22300788 | Cme12g01626 | Cme-Chr12:23421827 | 6.59E-15 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42199 | PF00642 | zf-CCCH | 3.30E-08 | CL0537 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01510 | - | - | csv:101221933 | 897.886 |