Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01510 ATGCCAGATAATCTGCAAGTTCAGAGGCATGATGTTCCTAACCAATCCCCTGATATCTCAGAGGCGCTTTGGCGGTTGGAAATCAGTGATAATCAAGATGGAGGTGATGCGGCCGAATCAAGCCCTTACCCCGATCGACCTGGCGAACCAGATTGCTTATATTATATGAGAACTGGGTCTTGTAGCTATGGAAGTAATTGTCGATTCAATCATCCTGTTTACGTTGGTCAGGGTGCTCTGTATAATGGGGAACTTCCAGAAAGAATTGGGCAACCCGACTGTGAGTACTTTCTGAAGACAGGGACCTGTAAATATGGAGGGTCATGTAAGTATCATCATCCAAGAGATAGGCGTGGAGCTGGGCCTGTTACATTTAACATTTTAGGCCTTCCCATGAGACAGGAAGAAAAGTCGTGCCCTTATTATTTGCGCACTGGATCGTGTAAATTTGGAGTTTCGTGTAAGTTCAATCATCCTCAGCCATCACCAGTTGGAAATTCGTTACCTCAAGCTAGACCTGGTGCGTTGGGTTCTGGAGGCACTCCATTCATGCCTTCATCTGGTGTGCCATATACTGGTGGAATTCCTGCTTGGTCATTGCCTAGAGTACAATATATGCCTGGTCCATGTGTACAAGGCCAACAATCTTATGTGCCTGTTCTGGTTTCTCCATCACAGGGTGCTATAGCTGCTCAAGACTGGAACACTTACGTGAGCAATGTCAATCCTATTCTTCCGAATCTTGGTTACAACTCTATCAATTTGGAGGACTCATATTCTAATGGGCAGTTGGCCTTATCAACATCAACTCCAACACTACCTGATCGACCTGATCAACCAGAATGTCGTTATTTCATGAACAATGGCACATGCAAATATGGTTCTGATTGTAAATTCCATCATCCGAAACAAAGAATTGCACAATCAGCAACGAATGCACTGGGACTTCCTTCAAGACCCGGACAAGCTATATGTTCATACTACAATATGTATGGGCTGTGCAAGTATGGGCCAAGTTGTAAATTTGACCACCCATCTCCAACATATCCTTATAATTATGGTTTCACTCTGCCTCTGCTTGATTCGTCTTTTATAAAGTATCCCAGCAACAACTTCACAATGTCCTCACATGAGACGTTGCCCGGGATGTTATCTAAATCTTCTGAATGGGTTCAGAAAGCTGATCCATCGAACAAGCGGCGAACTACCGATTCAAAAGTCATAGTAGACAGCACAGGCGAAGAGGCAACCTCTGTTTCATGCTCATTACCGGGTGGTTCAGAAAGTTTACAAGATCAATGA 1302 44.16 MPDNLQVQRHDVPNQSPDISEALWRLEISDNQDGGDAAESSPYPDRPGEPDCLYYMRTGSCSYGSNCRFNHPVYVGQGALYNGELPERIGQPDCEYFLKTGTCKYGGSCKYHHPRDRRGAGPVTFNILGLPMRQEEKSCPYYLRTGSCKFGVSCKFNHPQPSPVGNSLPQARPGALGSGGTPFMPSSGVPYTGGIPAWSLPRVQYMPGPCVQGQQSYVPVLVSPSQGAIAAQDWNTYVSNVNPILPNLGYNSINLEDSYSNGQLALSTSTPTLPDRPDQPECRYFMNNGTCKYGSDCKFHHPKQRIAQSATNALGLPSRPGQAICSYYNMYGLCKYGPSCKFDHPSPTYPYNYGFTLPLLDSSFIKYPSNNFTMSSHETLPGMLSKSSEWVQKADPSNKRRTTDSKVIVDSTGEEATSVSCSLPGGSESLQDQ 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22300788 22304929 + MELO3C019730.2.1 Cme11g01510 342173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01510 433 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 14 405 - -
Cme11g01510 433 MobiDBLite consensus disorder prediction 387 433 - -
Cme11g01510 433 SUPERFAMILY CCCH zinc finger 93 117 IPR036855 GO:0046872
Cme11g01510 433 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Cme11g01510 433 PANTHER PROTEIN PHOSPHATASE RELATED 14 405 - -
Cme11g01510 433 SUPERFAMILY CCCH zinc finger 322 347 IPR036855 GO:0046872
Cme11g01510 433 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Cme11g01510 433 SUPERFAMILY CCCH zinc finger 280 304 IPR036855 GO:0046872
Cme11g01510 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 160 IPR000571 GO:0046872
Cme11g01510 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Cme11g01510 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Cme11g01510 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Cme11g01510 433 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 72 IPR000571 GO:0046872
Cme11g01510 433 Gene3D - 45 121 - -
Cme11g01510 433 Gene3D - 274 351 - -
Cme11g01510 433 MobiDBLite consensus disorder prediction 409 433 - -
Cme11g01510 433 Gene3D - 122 169 - -
Cme11g01510 433 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Cme11g01510 433 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Cme11g01510 433 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Cme11g01510 433 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Cme11g01510 433 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Cme11g01510 433 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Cme11g01510 433 MobiDBLite consensus disorder prediction 393 408 - -
Cme11g01510 433 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Cme11g01510 433 SUPERFAMILY CCCH zinc finger 51 73 IPR036855 GO:0046872
Cme11g01510 433 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Cme11g01510 433 SUPERFAMILY CCCH zinc finger 132 161 IPR036855 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00709 Cme-Chr6:4618750 Cme11g01510 Cme-Chr11:22300788 2.43E-74 dispersed
Cme11g01510 Cme-Chr11:22300788 Cme12g01626 Cme-Chr12:23421827 6.59E-15 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42199 PF00642 zf-CCCH 3.30E-08 CL0537 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01510 - - csv:101221933 897.886