Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01544 ATGGACTATAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCCACTCTCACAGATTCTCTTGTGGCTGCTGCCGGTATCATTGCACAAGAAGTTGCTGGTGATGTACGAATGACAGATACTCGTCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGGAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCATGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGCATCGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGGCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGATAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAAGAGGCTTATCAAACGTTCCAGAGGGTCATTGAGAATGCCAATGTGATTATGGCCACATATGAGGATCCACTTCTTGGCGATGTTCAAGTGTACCCCGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCATTTACCCTGACTAACTTTGCGAAGATGTATGCTTCCAAGTTTGGAGTAGATGAGGCGAAGATGATGGAGAGACTTTGGGGTGAGAATTTCTTTGATCCTGCAACCAAGAAGTGGACCAGCAAGAACACTGGCTCGCCAACATGCAAGCGTGGGTTTGAGGTTCTAATTTCCTATGGGAAGTTTTTTGTTATTTGA 816 44.98 MDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFEVLISYGKFFVI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22944435 22947461 + MELO3C019699.2.1 Cme11g01544 342207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01544 271 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 IPR031157 -
Cme11g01544 271 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 241 IPR000795 GO:0003924|GO:0005525
Cme11g01544 271 TIGRFAM small_GTP: small GTP-binding protein domain 7 165 IPR005225 GO:0005525
Cme11g01544 271 Gene3D - 1 225 IPR027417 -
Cme11g01544 271 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 10 260 - -
Cme11g01544 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 249 IPR027417 -
Cme11g01544 271 Pfam Elongation factor Tu GTP binding domain 5 209 IPR000795 GO:0003924|GO:0005525
Cme11g01544 271 PRINTS GTP-binding elongation factor signature 141 150 IPR000795 GO:0003924|GO:0005525
Cme11g01544 271 PRINTS GTP-binding elongation factor signature 53 61 IPR000795 GO:0003924|GO:0005525
Cme11g01544 271 PRINTS GTP-binding elongation factor signature 89 99 IPR000795 GO:0003924|GO:0005525
Cme11g01544 271 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cme11g01544 271 PRINTS GTP-binding elongation factor signature 105 116 IPR000795 GO:0003924|GO:0005525
Cme11g01544 271 CDD EF2 8 218 - -
Cme11g01544 271 PANTHER BNAC03G76150D PROTEIN 10 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01544 Cme-Chr11:22944435 Cme11g01583 Cme-Chr11:23495891 0 dispersed
Cme11g01544 Cme-Chr11:22944435 Cme11g01547 Cme-Chr11:22993916 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01544 K03234 - tcc:18594569 517.309