Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01545 ATGGAGGAATCTGGTGAGCACATTGTTGCTGGTGCTGGAGAACTACATCTTGAGATCTGTTTGAAGGATTTACAAGAGGATTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACCGTACTTGAGAGATCATGTCGCACAGTGATGAGCAAATCCCCTAACAAACACAATCGACTGTACATGGAAGCACGACCCATGGAGGATGGACTGGCAGAGGCTATTGATGATGGCCGCATTGGACCACGAGATGATCCTAAAGTTAGGTCTAAAATTTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGCCCTAACATGGTGGTCGATATGTGTAAGGGAGTTCAATACTTGAATGAAATCAAGGATTCCGTCGTTGCTGGTTTCCAATGGGCGTCGAAAGAAGGTGCATTGGCGGAAGAGAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCTACTGCTAGAAGGGTAATCTACGCTTCTCAGCTGACTGCCAAACCAAGACTTCTTGAGCCAGTGTACCTAGTGGAGATTCAGGCTCCCGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAAAAGCGTGGGCACGTCTTTGAGGAAATGCAAAGGCCTGGCACACCTCTTTACAACATCAAGGCATATCTCCCTGTCATCGAATCATTTGGATTCTCGAGCACTTTGAGAGCTGCAACTTCTGGACAGGCATTCCCACAGTGTGTGTTTGACCATTGGGAAATGATGTCTTCGGATCCATTAGAAAGTGGGTCTCAAGCTGCGCAGTTGGTTGCTGATATCAGGAAGAGGAAGGGGTTGAAGGAACAAATGACTCCGTTGTCCGAGTTTGAGGACAAGCTG 966 47.1 MEESGEHIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEDGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWEMMSSDPLESGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22946397 22947364 + MELO3C000761.2.1 Cme11g01545 342208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01545 322 Gene3D - 202 322 - -
Cme11g01545 322 SMART EFG_IV_2 85 201 IPR005517 GO:0005525
Cme11g01545 322 CDD aeEF2_snRNP_like_IV 38 210 - -
Cme11g01545 322 SMART EFG_C_a 203 292 IPR000640 -
Cme11g01545 322 CDD eEF2_snRNP_like_C 206 284 - -
Cme11g01545 322 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 321 - -
Cme11g01545 322 Pfam Elongation factor G C-terminus 203 290 IPR000640 -
Cme11g01545 322 Gene3D Elongation Factor G (Translational Gtpase), domain 3 1 42 - -
Cme11g01545 322 PANTHER - 1 321 - -
Cme11g01545 322 SUPERFAMILY EF-G C-terminal domain-like 206 317 IPR035647 -
Cme11g01545 322 Pfam Elongation factor G, domain IV 89 201 IPR005517 GO:0005525
Cme11g01545 322 Gene3D - 49 201 IPR014721 -
Cme11g01545 322 SUPERFAMILY Ribosomal protein S5 domain 2-like 41 205 IPR020568 -
Cme11g01545 322 Coils Coil 315 322 - -
Cme11g01545 322 SUPERFAMILY EF-G C-terminal domain-like 2 39 IPR035647 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01545 Cme-Chr11:22946397 Cme09g01652 Cme-Chr9:21255048 2.39E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01545 K03234 - csv:101209544 647.506