Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01546 ATGGATTCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCCTCCCTCAACCCAGAACGTGAAGATTCGCATGTGGTTACCGACGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGCGACTTGGATGGGATTAGGGAGCTACTGGACTCCGCTACGGATGTAAATTTTCACGACACTGATGGTCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGCCCGGATGTCGTTGAGTTGCTACTTGAAAGGGGTGCGGAGGTCGATGTTCAGGACCAATGGGGTAGTACGCCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAGAAGCATGGTGCAAAGTTGCCGATGGCTCCAATGCTTGTGCAAAATGCTCGTGAAGTTCCAGAATATGAAATCAATCCGAATGAGCTTGATTTTTCTAATAGTGTGAACATTACAAAAGGAACTTTTCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACAGATGAAGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGGTACGCCATCCTAATGTTGTCCAATTTCTGGGAGCCGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTTCCTTGAAGCTAGAAACAGTCATAAAGTTTGCTCTTGACATTGCAAGGGGGATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGTGATCTTGAACCTTCAAACATACTGCGGGACGATTCTGGGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCAAATAGGGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCGTGAAACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTACCCAAAGCTTATATAGCTAATGAACGCCCGCTATTTATGGCTCCACCAAAGCGTTATGCATTTGGAATACAAGAGCTAATTCAGGAATGTTGGGATGAGAAGCCGCAAAAAAGACCCACATTTCGGCAAATAATAAGAAGGTTGAAGGATATTAACACTCGACTCATGCAAACAAGAAGCTTGAAGGAAAATCCACTGTGCAGTTGTTTTCAGAACCTGAAAGCCTTATTTACAAGCGAAAGAACTAATCCAGGCAGCAGATCTTCTTACTCGGAAAGCAAATGA 1386 42.78 MDSNVRARFTLGKQSSLNPEREDSHVVTDELDDSIAIDPGIKLMYLANDGDLDGIRELLDSATDVNFHDTDGRTSLHVAACQGRPDVVELLLERGAEVDVQDQWGSTPLADAIYYKNHDVIKLLEKHGAKLPMAPMLVQNAREVPEYEINPNELDFSNSVNITKGTFRSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKVRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGSLKLETVIKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCRETSWRYAAPEVYKNEEYDTKVDVFSFSLILQEMIEGNPPFPTMPENEVPKAYIANERPLFMAPPKRYAFGIQELIQECWDEKPQKRPTFRQIIRRLKDINTRLMQTRSLKENPLCSCFQNLKALFTSERTNPGSRSSYSESK 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22963155 22977747 + MELO3C019698.2.1 Cme11g01546 342209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01546 461 SMART ANK_2a 39 67 IPR002110 GO:0005515
Cme11g01546 461 SMART ANK_2a 71 100 IPR002110 GO:0005515
Cme11g01546 461 SMART ANK_2a 104 133 IPR002110 GO:0005515
Cme11g01546 461 MobiDBLite consensus disorder prediction 1 17 - -
Cme11g01546 461 CDD STKc_MAP3K-like 162 415 - -
Cme11g01546 461 Pfam Protein tyrosine and serine/threonine kinase 161 415 IPR001245 GO:0004672|GO:0006468
Cme11g01546 461 MobiDBLite consensus disorder prediction 1 25 - -
Cme11g01546 461 ProSiteProfiles Ankyrin repeat region circular profile. 71 102 - -
Cme11g01546 461 SUPERFAMILY Ankyrin repeat 42 133 IPR036770 -
Cme11g01546 461 Gene3D Transferase(Phosphotransferase) domain 1 232 451 - -
Cme11g01546 461 PANTHER INTEGRIN-LINKED KINASE FAMILY PROTEIN 9 439 - -
Cme11g01546 461 SUPERFAMILY Protein kinase-like (PK-like) 173 440 IPR011009 -
Cme11g01546 461 ProSiteProfiles Protein kinase domain profile. 121 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01546 461 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 9 439 - -
Cme11g01546 461 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515
Cme11g01546 461 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Cme11g01546 461 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Cme11g01546 461 PIRSF ILK 2 438 - -
Cme11g01546 461 Gene3D - 33 143 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00295 Cme-Chr1:2211582 Cme11g01546 Cme-Chr11:22963155 1.24E-136 dispersed
Cme02g01416 Cme-Chr2:20391052 Cme11g01546 Cme-Chr11:22963155 4.86E-23 dispersed
Cme11g01546 Cme-Chr11:22963155 Cme12g01253 Cme-Chr12:20660326 0 dispersed
Cme01g01198 Cme-Chr1:15197127 Cme11g01546 Cme-Chr11:22963155 6.53E-07 transposed
Cme02g00343 Cme-Chr2:2832032 Cme11g01546 Cme-Chr11:22963155 1.23E-08 transposed
Cme04g02486 Cme-Chr4:31301611 Cme11g01546 Cme-Chr11:22963155 1.70E-10 transposed
Cme05g00201 Cme-Chr5:1421289 Cme11g01546 Cme-Chr11:22963155 8.96E-17 transposed
Cme10g00015 Cme-Chr10:168996 Cme11g01546 Cme-Chr11:22963155 7.16E-06 transposed
Cme10g00387 Cme-Chr10:2488737 Cme11g01546 Cme-Chr11:22963155 3.08E-106 transposed
Cme07g00188 Cme-Chr7:1277550 Cme11g01546 Cme-Chr11:22963155 4.52E-26 transposed
Cme11g01546 Cme-Chr11:22963155 Cme08g00191 Cme-Chr8:1316654 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65257 PF07714 PK_Tyr_Ser-Thr 3.10E-59 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01546 - - csv:101218932 902.508