Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01546 | ATGGATTCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCCTCCCTCAACCCAGAACGTGAAGATTCGCATGTGGTTACCGACGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGCGACTTGGATGGGATTAGGGAGCTACTGGACTCCGCTACGGATGTAAATTTTCACGACACTGATGGTCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGCCCGGATGTCGTTGAGTTGCTACTTGAAAGGGGTGCGGAGGTCGATGTTCAGGACCAATGGGGTAGTACGCCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAGAAGCATGGTGCAAAGTTGCCGATGGCTCCAATGCTTGTGCAAAATGCTCGTGAAGTTCCAGAATATGAAATCAATCCGAATGAGCTTGATTTTTCTAATAGTGTGAACATTACAAAAGGAACTTTTCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACAGATGAAGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGGTACGCCATCCTAATGTTGTCCAATTTCTGGGAGCCGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTTCCTTGAAGCTAGAAACAGTCATAAAGTTTGCTCTTGACATTGCAAGGGGGATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGTGATCTTGAACCTTCAAACATACTGCGGGACGATTCTGGGCACCTGAAAGTTGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCAAATAGGGTTAAAGAAGACAGACCTGTGGCTGTGACATGTCGTGAAACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTACCCAAAGCTTATATAGCTAATGAACGCCCGCTATTTATGGCTCCACCAAAGCGTTATGCATTTGGAATACAAGAGCTAATTCAGGAATGTTGGGATGAGAAGCCGCAAAAAAGACCCACATTTCGGCAAATAATAAGAAGGTTGAAGGATATTAACACTCGACTCATGCAAACAAGAAGCTTGAAGGAAAATCCACTGTGCAGTTGTTTTCAGAACCTGAAAGCCTTATTTACAAGCGAAAGAACTAATCCAGGCAGCAGATCTTCTTACTCGGAAAGCAAATGA | 1386 | 42.78 | MDSNVRARFTLGKQSSLNPEREDSHVVTDELDDSIAIDPGIKLMYLANDGDLDGIRELLDSATDVNFHDTDGRTSLHVAACQGRPDVVELLLERGAEVDVQDQWGSTPLADAIYYKNHDVIKLLEKHGAKLPMAPMLVQNAREVPEYEINPNELDFSNSVNITKGTFRSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKVRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGSLKLETVIKFALDIARGMNYLHEHKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKFSNRVKEDRPVAVTCRETSWRYAAPEVYKNEEYDTKVDVFSFSLILQEMIEGNPPFPTMPENEVPKAYIANERPLFMAPPKRYAFGIQELIQECWDEKPQKRPTFRQIIRRLKDINTRLMQTRSLKENPLCSCFQNLKALFTSERTNPGSRSSYSESK | 461 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 22963155 | 22977747 | + | MELO3C019698.2.1 | Cme11g01546 | 342209 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01546 | 461 | SMART | ANK_2a | 39 | 67 | IPR002110 | GO:0005515 | |
Cme11g01546 | 461 | SMART | ANK_2a | 71 | 100 | IPR002110 | GO:0005515 | |
Cme11g01546 | 461 | SMART | ANK_2a | 104 | 133 | IPR002110 | GO:0005515 | |
Cme11g01546 | 461 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cme11g01546 | 461 | CDD | STKc_MAP3K-like | 162 | 415 | - | - | |
Cme11g01546 | 461 | Pfam | Protein tyrosine and serine/threonine kinase | 161 | 415 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g01546 | 461 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cme11g01546 | 461 | ProSiteProfiles | Ankyrin repeat region circular profile. | 71 | 102 | - | - | |
Cme11g01546 | 461 | SUPERFAMILY | Ankyrin repeat | 42 | 133 | IPR036770 | - | |
Cme11g01546 | 461 | Gene3D | Transferase(Phosphotransferase) domain 1 | 232 | 451 | - | - | |
Cme11g01546 | 461 | PANTHER | INTEGRIN-LINKED KINASE FAMILY PROTEIN | 9 | 439 | - | - | |
Cme11g01546 | 461 | SUPERFAMILY | Protein kinase-like (PK-like) | 173 | 440 | IPR011009 | - | |
Cme11g01546 | 461 | ProSiteProfiles | Protein kinase domain profile. | 121 | 422 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01546 | 461 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 9 | 439 | - | - | |
Cme11g01546 | 461 | Pfam | Ankyrin repeats (3 copies) | 43 | 131 | IPR002110 | GO:0005515 | |
Cme11g01546 | 461 | Gene3D | Phosphorylase Kinase; domain 1 | 148 | 231 | - | - | |
Cme11g01546 | 461 | ProSiteProfiles | Ankyrin repeat profile. | 71 | 103 | IPR002110 | GO:0005515 | |
Cme11g01546 | 461 | PIRSF | ILK | 2 | 438 | - | - | |
Cme11g01546 | 461 | Gene3D | - | 33 | 143 | IPR036770 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g00295 | Cme-Chr1:2211582 | Cme11g01546 | Cme-Chr11:22963155 | 1.24E-136 | dispersed | |
Cme02g01416 | Cme-Chr2:20391052 | Cme11g01546 | Cme-Chr11:22963155 | 4.86E-23 | dispersed | |
Cme11g01546 | Cme-Chr11:22963155 | Cme12g01253 | Cme-Chr12:20660326 | 0 | dispersed | |
Cme01g01198 | Cme-Chr1:15197127 | Cme11g01546 | Cme-Chr11:22963155 | 6.53E-07 | transposed | |
Cme02g00343 | Cme-Chr2:2832032 | Cme11g01546 | Cme-Chr11:22963155 | 1.23E-08 | transposed | |
Cme04g02486 | Cme-Chr4:31301611 | Cme11g01546 | Cme-Chr11:22963155 | 1.70E-10 | transposed | |
Cme05g00201 | Cme-Chr5:1421289 | Cme11g01546 | Cme-Chr11:22963155 | 8.96E-17 | transposed | |
Cme10g00015 | Cme-Chr10:168996 | Cme11g01546 | Cme-Chr11:22963155 | 7.16E-06 | transposed | |
Cme10g00387 | Cme-Chr10:2488737 | Cme11g01546 | Cme-Chr11:22963155 | 3.08E-106 | transposed | |
Cme07g00188 | Cme-Chr7:1277550 | Cme11g01546 | Cme-Chr11:22963155 | 4.52E-26 | transposed | |
Cme11g01546 | Cme-Chr11:22963155 | Cme08g00191 | Cme-Chr8:1316654 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65257 | PF07714 | PK_Tyr_Ser-Thr | 3.10E-59 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01546 | - | - | csv:101218932 | 902.508 |