Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01547 ATGAATGAATTGACTTGGCCCAGCCCAATCAGAAACCCTAGGTGGCGCAACAGGAAATGCTTCATTGAGACCGCATATTCAGCCTCACTATTACCTTTCACCCGCTCTCTGTTTCCTCCTCCCCCGCACTCTGTTTCGCTTCTTGTACTTCTCTTTTGTGGTAGCTCAAGGGAAACTCTCTCTTCCTTTGCTGCCCCTTCATCGTCTCTCACCTTCTTCTTTCCTGTTAAGTTTACAGCCGAGGAGCTTCGTCGGATTATGGACTATAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGAAAGTCGACACTTACAGATTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCTGGTGATGTACGAATGACAGATACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATCAAATCCACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGCATCGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGATAGGTGCTTCCTTGAACTTCAAGTGGATGGAGAAGAGGCTTATCAAACATTCCAGAGGGTCATTGAGAATGCCAATGTGATTATGGCCACATATGAGGATCCACTTCTTGGCGATGTTCAAGTGTACCCTGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCATTTACCCTGACTAACTTTGCAAAGATGTATGCTTCCAAGTTCGGAGTAGATGAGGCGAAGATGATGGAGAGACTTTGGGGTGAGAATTTCTTTGATCCTGCAACCAAGAAGTGGACCAGCAAGAACACTGGCTCGCCAACATGCAAGCGTGGATGTCACGAAATAATGATGAGGTTGTTGAAATTGATAGATTAA 1074 45.62 MNELTWPSPIRNPRWRNRKCFIETAYSASLLPFTRSLFPPPPHSVSLLVLLFCGSSRETLSSFAAPSSSLTFFFPVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTSKNTGSPTCKRGCHEIMMRLLKLID 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22993916 22999540 + MELO3C019697.2.1 Cme11g01547 342210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01547 357 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 76 346 - -
Cme11g01547 357 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 327 IPR000795 GO:0003924|GO:0005525
Cme11g01547 357 CDD EF2 94 304 - -
Cme11g01547 357 Pfam Elongation factor Tu GTP binding domain 91 295 IPR000795 GO:0003924|GO:0005525
Cme11g01547 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 335 IPR027417 -
Cme11g01547 357 PANTHER OS01G0742200 PROTEIN 76 346 - -
Cme11g01547 357 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Cme11g01547 357 Gene3D - 77 311 IPR027417 -
Cme11g01547 357 TIGRFAM small_GTP: small GTP-binding protein domain 93 250 IPR005225 GO:0005525
Cme11g01547 357 PRINTS GTP-binding elongation factor signature 227 236 IPR000795 GO:0003924|GO:0005525
Cme11g01547 357 PRINTS GTP-binding elongation factor signature 175 185 IPR000795 GO:0003924|GO:0005525
Cme11g01547 357 PRINTS GTP-binding elongation factor signature 139 147 IPR000795 GO:0003924|GO:0005525
Cme11g01547 357 PRINTS GTP-binding elongation factor signature 191 202 IPR000795 GO:0003924|GO:0005525
Cme11g01547 357 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00289 Cme-Chr9:2298642 Cme11g01547 Cme-Chr11:22993916 8.69E-24 dispersed
Cme11g01547 Cme-Chr11:22993916 Cme11g01583 Cme-Chr11:23495891 0 dispersed
Cme11g01544 Cme-Chr11:22944435 Cme11g01547 Cme-Chr11:22993916 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01547 K03234 - tcc:18594569 535.028