Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01564 ATGCAGCAAGATCAAAGCAAAAAGAATTCAACCGAAGGGGAGTTCTTTTCTGATTATGGCGATGCCAGTAGATACAAAATTCAGGAAGTAATTGGTAAAGGAAGCTATGGGGTTGTCTGTTCTGCAATTGACACCCGCACCGGCGACAAGGTTGCAATAAAGAAGATTCACAATATCTTTGAGCATATATCTGATGCGGTTAGAATTCTTCGTGAGATAAAGCTGCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACACATTATGCTGCCACCTTCAAGGAGGGATTTCAAAGACATCTATGTTGTTTTCGAGCTGATGGAATCAGATCTCCACCAAGTTATTAAAGCAAACGATGATCTGACTCGAGAACATTATCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAATATATCCATACAGCTAATGTCTACCACCGTGATTTAAAACCAAAGAATATATTAGCAAATGCAAATTGTAAACTTAAAATTTGTGATTTTGGATTGGCAAGAGTTGCGTTCAGTGACACACCAACTACAATTTTCTGGACGGATTATGTTGCTACTAGATGGTACAGAGCTCCAGAGCTATGTGGTTCATTTTTCTCCAAGTATACACCTGCAATTGATATATGGAGTATTGGTTGCATATTTGCCGAAGTATTGATGGGGAAACCACTTTTTCCTGGTAAAAATGTTGTACACCAGCTCGATTTGATGACGGATCTCCTTGGAACTCCTTCATTAGATACAATCTCCAGGGTACGTAATGACAAGGCTAGAAGATACTTAACTACTATGAGGAAAAAGCAGCCGGTGCCATTTTCTCAAAAGTTCCCAAATGCAGATCCTTTAGCACTGAGGCTACTAGAAAGACTCCTTGCTTTTGATCCAAAAGATAGACCAACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGGTTGGCAAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCACAAAAATGGAATTTGAATTTGAGAGACGGAGGGTCACTAAAGAAGACATTCAGGAGCTAATCTTTCGGGAGATACTAGAATATCATCCTCAGCTACTAAAAGATTACATGAATGGGACTGAGAGAACAAATTTTCTATATCCAAGTGCTGTCGATCAATTTAGAAAGCAGTTTGCTCATCTGGAGGAAAATGGTGGTAAAAGTGCACCGGTAATTCCTCTTGACAGAAAGCATGTATCCCTTCCAAGGTCAACAGTTGTACACTCGAACCCGGTCTATTCTAAGGACCAAGTAAGCAATGTACCCCTCCAAGATGGGAAGATCTCTGAAGATGCATACAGCAAGAATTCCCGAGATAGTGAAGGACGGCTAACAAATATATCGAGGACCATGCAGGCACCACAAAAAAACCCGTTTGCAGCTAAGCCTGGAAGAGTGGTTGGACCGGTTATAGCAGACGAGAGTGGGAGGCTAGTGAAGGAACCATATGATCCAAGAACGTTGATCAGAGGTGCCATTCTTCCTCCTGCATATCACTACCACCAAAAACCCATTGTTGGAAATCAAGAAAGATCTGCTGCAGAAACAAAACTTGATATTTCTTTAAGGGCCGCTAAGCAAGCATCCCAGTGCGGCATGGCTTCCAAATTAGGATCAGATATAGCCATCAGTATCGACTCAAACCCTTTTTACATGACACGTGCCGGAGTGAACAAGGTTGAACTCAAGGACCAAATATCCATCAATGCGAACTTTCTGCAGGCCAAAGCCGCCCAATACGGTGGTCTTAGTGCAGCAACAGCCACCACCACATCGGTTGCTCACAGAAAGGTGGTTGCTGGTCAGTTCAACATGACAAAGATGTACTAA 1863 42.08 MQQDQSKKNSTEGEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKMEFEFERRRVTKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSAPVIPLDRKHVSLPRSTVVHSNPVYSKDQVSNVPLQDGKISEDAYSKNSRDSEGRLTNISRTMQAPQKNPFAAKPGRVVGPVIADESGRLVKEPYDPRTLIRGAILPPAYHYHQKPIVGNQERSAAETKLDISLRAAKQASQCGMASKLGSDIAISIDSNPFYMTRAGVNKVELKDQISINANFLQAKAAQYGGLSAATATTTSVAHRKVVAGQFNMTKMY 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23160600 23165895 - MELO3C019687.2.1 Cme11g01564 342227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01564 620 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 495 - -
Cme11g01564 620 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01564 620 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cme11g01564 620 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Cme11g01564 620 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01564 620 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 495 - -
Cme11g01564 620 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cme11g01564 620 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Cme11g01564 620 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Cme11g01564 620 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01564 620 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01564 Cme-Chr11:23160600 Cme12g01839 Cme-Chr12:24749678 0 dispersed
Cme07g01383 Cme-Chr7:19373528 Cme11g01564 Cme-Chr11:23160600 0 transposed
Cme11g01943 Cme-Chr11:27494941 Cme11g01564 Cme-Chr11:23160600 0 transposed
Cme11g01564 Cme-Chr11:23160600 Cme05g00289 Cme-Chr5:2156882 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65258 PF00069 Pkinase 1.50E-66 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01564 - - csv:101216657 1201.42