Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01574 | ATGGCGTCTGGGAGTTCATTGAATGATCATTTATCCAAGAAGACTTCATTTTGGGGATTGTCATTATGGGTTTTGATCTGCATTTGCATTGGTGCATTTATAGTTTTGATTCTTGGTTTGTTATCTATGTGGATCCTGTTTAGAAAAAAATCTAAAAGATCTATGGACAAATTCACTATTTCCCAAATACCTTTTTCAAAAGATATCAGGATAGATCAGGTTGGGATTCAAACTCCCAATGACCACCCTGAACATAGACTTCTTTCAGTTGATGTCAAAAGAAATGATGAAAATTCAGAAGTTAGGGCTGTGACAAAATCAAGTGAACCTGATAACAATAGCCAATGCAGCTCCACTTACCAACATGAAAAAGCTGGCAATTCACAATCCGGGGAAGAAGGAAGCTCTGGAAATGCTCGGAAGCAGGCTTCAAGGTCGTATGGAGGACTTGGAGGAATTGTGCCACCGTCTCCTCTTGTTGGCTTGCCAGAAATTTCACATCTTGGGTGGGGCCACTGGTTCACTCTCAGGGATCTAGAGCTTGCAACTAATCGTTTTTCCACCGAAAATATTCTTGGGGAGGGAGGATATGGGGTTGTTTATAAGGGCAGACTCATTAATGGCACTGAAGTTGCGGTGAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAAGCTATTGGCCACGTTCGGCATAAGAATCTTGTCCGACTGCTGGGCTATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAATATGTGAACAATGGAAATCTAGAACAGTGGCTACATGGAGCCATGTGCAAACACGGCACACTTACGTGGGAGGCTCGCATGAAGGTTCTTCTTGGCACTGCTAAAGCGCTTGCGTATTTACATGAAGCAATCGAGCCAAAAGTTGTTCACAGAGACATAAAATCAAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCTGATTTTGGATTGGCCAAACTCTTGGGCTCAGGAGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGGTATGTGGCACCAGAATATGCAAATACAGGCTTGTTGAATGAAAAGAGTGACATCTATAGCTTCGGTGTTCTCTTGCTAGAAGCAATTACAGGGAGGGATCCCGTGGATTATGCACGTCCTTCTAATGAGGTTAATCTGGTTGAGTGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACATGAACCTTGAGATCAAGCCAACTACTCGTGCTTTGAAACGTGCTCTTCTTGTTGCTCTTAGGTGTATTGATCCTGAATCAATCAAGAGACCCAAAATGAGTCAAGTTGTAAGAATGCTTGAAGCCGATGAATTTCCACTCCACGAGGATAGGAGGAGCCGAAAAAGCCGATCAATTAGCTTGGAGATCGAGTCAATGAAAGAAATACCAGGTTCAGAGCAGACGGGTGGGCCGTCTGAGAGCCATAAATCAGAGACAAGCCATGAATAG | 1521 | 42.74 | MASGSSLNDHLSKKTSFWGLSLWVLICICIGAFIVLILGLLSMWILFRKKSKRSMDKFTISQIPFSKDIRIDQVGIQTPNDHPEHRLLSVDVKRNDENSEVRAVTKSSEPDNNSQCSSTYQHEKAGNSQSGEEGSSGNARKQASRSYGGLGGIVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMCKHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLEIKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRSRKSRSISLEIESMKEIPGSEQTGGPSESHKSETSHE | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23333440 | 23338322 | - | MELO3C019678.2.1 | Cme11g01574 | 342237 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01574 | 506 | MobiDBLite | consensus disorder prediction | 97 | 148 | - | - | |
Cme11g01574 | 506 | CDD | STKc_IRAK | 192 | 458 | - | - | |
Cme11g01574 | 506 | MobiDBLite | consensus disorder prediction | 464 | 506 | - | - | |
Cme11g01574 | 506 | ProSiteProfiles | Protein kinase domain profile. | 186 | 450 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01574 | 506 | SMART | serkin_6 | 186 | 440 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01574 | 506 | ProSitePatterns | Protein kinases ATP-binding region signature. | 192 | 215 | IPR017441 | GO:0005524 | |
Cme11g01574 | 506 | PANTHER | OS10G0497600 PROTEIN | 3 | 500 | - | - | |
Cme11g01574 | 506 | MobiDBLite | consensus disorder prediction | 464 | 479 | - | - | |
Cme11g01574 | 506 | Gene3D | Transferase(Phosphotransferase) domain 1 | 262 | 474 | - | - | |
Cme11g01574 | 506 | MobiDBLite | consensus disorder prediction | 105 | 143 | - | - | |
Cme11g01574 | 506 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 308 | 320 | IPR008271 | GO:0004672|GO:0006468 | |
Cme11g01574 | 506 | PANTHER | OS01G0323000 PROTEIN | 3 | 500 | - | - | |
Cme11g01574 | 506 | Pfam | Protein kinase domain | 187 | 455 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01574 | 506 | Gene3D | Phosphorylase Kinase; domain 1 | 168 | 261 | - | - | |
Cme11g01574 | 506 | Coils | Coil | 206 | 226 | - | - | |
Cme11g01574 | 506 | SUPERFAMILY | Protein kinase-like (PK-like) | 170 | 463 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01552 | Cme-Chr1:20596157 | Cme11g01574 | Cme-Chr11:23333440 | 1.23E-26 | dispersed | |
Cme01g01553 | Cme-Chr1:20596585 | Cme11g01574 | Cme-Chr11:23333440 | 1.09E-50 | dispersed | |
Cme03g02062 | Cme-Chr3:28105142 | Cme11g01574 | Cme-Chr11:23333440 | 0 | dispersed | |
Cme05g01512 | Cme-Chr5:24527311 | Cme11g01574 | Cme-Chr11:23333440 | 0 | dispersed | |
Cme08g00582 | Cme-Chr8:3680046 | Cme11g01574 | Cme-Chr11:23333440 | 8.64E-177 | dispersed | |
Cme11g01574 | Cme-Chr11:23333440 | Cme11g02117 | Cme-Chr11:28760979 | 0 | dispersed | |
Cme03g00296 | Cme-Chr3:3795027 | Cme11g01574 | Cme-Chr11:23333440 | 1.35E-72 | transposed | |
Cme01g01543 | Cme-Chr1:20540304 | Cme11g01574 | Cme-Chr11:23333440 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65259 | PF00069 | Pkinase | 2.00E-48 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01574 | - | - | csv:101214087 | 965.681 |