Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01574 ATGGCGTCTGGGAGTTCATTGAATGATCATTTATCCAAGAAGACTTCATTTTGGGGATTGTCATTATGGGTTTTGATCTGCATTTGCATTGGTGCATTTATAGTTTTGATTCTTGGTTTGTTATCTATGTGGATCCTGTTTAGAAAAAAATCTAAAAGATCTATGGACAAATTCACTATTTCCCAAATACCTTTTTCAAAAGATATCAGGATAGATCAGGTTGGGATTCAAACTCCCAATGACCACCCTGAACATAGACTTCTTTCAGTTGATGTCAAAAGAAATGATGAAAATTCAGAAGTTAGGGCTGTGACAAAATCAAGTGAACCTGATAACAATAGCCAATGCAGCTCCACTTACCAACATGAAAAAGCTGGCAATTCACAATCCGGGGAAGAAGGAAGCTCTGGAAATGCTCGGAAGCAGGCTTCAAGGTCGTATGGAGGACTTGGAGGAATTGTGCCACCGTCTCCTCTTGTTGGCTTGCCAGAAATTTCACATCTTGGGTGGGGCCACTGGTTCACTCTCAGGGATCTAGAGCTTGCAACTAATCGTTTTTCCACCGAAAATATTCTTGGGGAGGGAGGATATGGGGTTGTTTATAAGGGCAGACTCATTAATGGCACTGAAGTTGCGGTGAAAAAACTTCTCAATAATCTGGGTCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAAGCTATTGGCCACGTTCGGCATAAGAATCTTGTCCGACTGCTGGGCTATTGCATAGAAGGAGTTCATAGGATGCTAGTATATGAATATGTGAACAATGGAAATCTAGAACAGTGGCTACATGGAGCCATGTGCAAACACGGCACACTTACGTGGGAGGCTCGCATGAAGGTTCTTCTTGGCACTGCTAAAGCGCTTGCGTATTTACATGAAGCAATCGAGCCAAAAGTTGTTCACAGAGACATAAAATCAAGCAACATTTTGATTGATGATGAGTTCAATGCCAAAGTTTCTGATTTTGGATTGGCCAAACTCTTGGGCTCAGGAGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGGTATGTGGCACCAGAATATGCAAATACAGGCTTGTTGAATGAAAAGAGTGACATCTATAGCTTCGGTGTTCTCTTGCTAGAAGCAATTACAGGGAGGGATCCCGTGGATTATGCACGTCCTTCTAATGAGGTTAATCTGGTTGAGTGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACATGAACCTTGAGATCAAGCCAACTACTCGTGCTTTGAAACGTGCTCTTCTTGTTGCTCTTAGGTGTATTGATCCTGAATCAATCAAGAGACCCAAAATGAGTCAAGTTGTAAGAATGCTTGAAGCCGATGAATTTCCACTCCACGAGGATAGGAGGAGCCGAAAAAGCCGATCAATTAGCTTGGAGATCGAGTCAATGAAAGAAATACCAGGTTCAGAGCAGACGGGTGGGCCGTCTGAGAGCCATAAATCAGAGACAAGCCATGAATAG 1521 42.74 MASGSSLNDHLSKKTSFWGLSLWVLICICIGAFIVLILGLLSMWILFRKKSKRSMDKFTISQIPFSKDIRIDQVGIQTPNDHPEHRLLSVDVKRNDENSEVRAVTKSSEPDNNSQCSSTYQHEKAGNSQSGEEGSSGNARKQASRSYGGLGGIVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMCKHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLEIKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRSRKSRSISLEIESMKEIPGSEQTGGPSESHKSETSHE 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23333440 23338322 - MELO3C019678.2.1 Cme11g01574 342237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01574 506 MobiDBLite consensus disorder prediction 97 148 - -
Cme11g01574 506 CDD STKc_IRAK 192 458 - -
Cme11g01574 506 MobiDBLite consensus disorder prediction 464 506 - -
Cme11g01574 506 ProSiteProfiles Protein kinase domain profile. 186 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01574 506 SMART serkin_6 186 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01574 506 ProSitePatterns Protein kinases ATP-binding region signature. 192 215 IPR017441 GO:0005524
Cme11g01574 506 PANTHER OS10G0497600 PROTEIN 3 500 - -
Cme11g01574 506 MobiDBLite consensus disorder prediction 464 479 - -
Cme11g01574 506 Gene3D Transferase(Phosphotransferase) domain 1 262 474 - -
Cme11g01574 506 MobiDBLite consensus disorder prediction 105 143 - -
Cme11g01574 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Cme11g01574 506 PANTHER OS01G0323000 PROTEIN 3 500 - -
Cme11g01574 506 Pfam Protein kinase domain 187 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01574 506 Gene3D Phosphorylase Kinase; domain 1 168 261 - -
Cme11g01574 506 Coils Coil 206 226 - -
Cme11g01574 506 SUPERFAMILY Protein kinase-like (PK-like) 170 463 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01552 Cme-Chr1:20596157 Cme11g01574 Cme-Chr11:23333440 1.23E-26 dispersed
Cme01g01553 Cme-Chr1:20596585 Cme11g01574 Cme-Chr11:23333440 1.09E-50 dispersed
Cme03g02062 Cme-Chr3:28105142 Cme11g01574 Cme-Chr11:23333440 0 dispersed
Cme05g01512 Cme-Chr5:24527311 Cme11g01574 Cme-Chr11:23333440 0 dispersed
Cme08g00582 Cme-Chr8:3680046 Cme11g01574 Cme-Chr11:23333440 8.64E-177 dispersed
Cme11g01574 Cme-Chr11:23333440 Cme11g02117 Cme-Chr11:28760979 0 dispersed
Cme03g00296 Cme-Chr3:3795027 Cme11g01574 Cme-Chr11:23333440 1.35E-72 transposed
Cme01g01543 Cme-Chr1:20540304 Cme11g01574 Cme-Chr11:23333440 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65259 PF00069 Pkinase 2.00E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01574 - - csv:101214087 965.681