Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01575 ATGGCAGCTTCATCCATGGCTCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAGTTATCCCCCACCGCCTCCGACCTCCTCGGCGAAGGCCGCATTACCATGAGAAAAACCGCCGGAAAGCCCAAGCCCGTTTCCTCCGGTAGCCCATGGTACGGCCCCGATCGTGTTAAATACCTAGGCCCATTCTCTGGCGAACCCCCATCCTATCTAACCGGAGAATTCCCCGGTGACTACGGTTGGGACACTGCCGGCCTCTCCGCCGACCCAGAAACCTTCGCCAAAAACCGTGAACTCGAAGTAATCCACTCGAGATGGGCCATGCTCGGAGCCTTAGGCTGCGTATTCCCGGAGCTCCTCTCTCGCAACGGAGTCAAATTCGGCGAGGCTGTGTGGTTCAAAGCTGGATCACAAATCTTCAGCGAAGGTGGGCTCGACTATTTGGGGAACCCAAGCTTGGTGCACGCGCAGAGTATTCTCGCCATTTGGGCTTGTCAAGTAGTGCTCATGGGAGCAGTGGAAGGATACAGAATTGCTGGGGGTCCGTTGGGTGAAATCACGGACCCGATTTACCCAGGTGGGAGCTTTGATCCATTGGGGCTGGCCGATGATCCAGAGGCATTTGCGGAATTGAAAGTGAAGGAGCTTAAGAATGGTAGATTGGCTATGTTTTCGATGTTCGGATTTTTCGTACAAGCGATTGTAACTGGGAAAGGGCCATTGGAGAACTTGGCTGATCATTTGGCTGACCCTGTTAACAACAATGCTTGGGCCTATGCTACTAACTTTGTACCTGGAAAGTGA 804 54.1 MAASSMALSSPSLAGQAVKLSPTASDLLGEGRITMRKTAGKPKPVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23355951 23357215 - MELO3C019677.2.1 Cme11g01575 342238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01575 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 267 IPR001344 GO:0009765|GO:0016020
Cme11g01575 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Cme11g01575 267 Pfam Chlorophyll A-B binding protein 67 233 IPR022796 -
Cme11g01575 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Cme11g01575 267 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01575 Cme-Chr11:23355951 Cme12g01212 Cme-Chr12:20231593 0 dispersed
Cme01g00539 Cme-Chr1:4041354 Cme11g01575 Cme-Chr11:23355951 1.53E-149 transposed
Cme07g00015 Cme-Chr7:145825 Cme11g01575 Cme-Chr11:23355951 1.08E-31 transposed
Cme09g00132 Cme-Chr9:974790 Cme11g01575 Cme-Chr11:23355951 1.56E-66 transposed
Cme11g01575 Cme-Chr11:23355951 Cme08g00160 Cme-Chr8:1124451 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01575 K08912 - csv:101213845 543.888