Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01583 | ATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTCGATCATGGGAAGTCCACTCTTACAGATTCTCTTGTGGCTGCTGCTGGTATCATTGCTCAAGAAGTTGCAGGTGATGTTCGTATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCTCTCTATTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTACGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGCATCGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAAAGGATTAGACCTGTCCTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAAGTAGATGGAGAAGAGGCTTATCAAACATTCCAGAGGGTCATTGAGAATGCCAATGTGATTATGGCCACTTATGAGGATCCACTTCTTGGCGATGTTCAAGTGTACCCCGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCATTTACCCTGACAAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGGCAAAGATGATGGAGAGACTTTGGGGTGAGAATTTCTTTGATCCTGCAACCAAGAAGTGGACCAGCAAGAATACTGGCTCACCAACTTGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCTATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAAGACAAGCTATGGCCCATGTTGCAGAAGCTTGGTGTTGTCATGAAGTCTGATGAGAAGGATCTGATGGGCAAACCATTGATGAAGCGGGTCATGCAAACATGGCTACCAGCAAGTACTGCTCTCTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCAAGGCCCAAAAGTATCGTGTGGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCTAGTGCCATTAGAAATTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCTGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTGTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATCATGGGCCCCAACTATGTTCCTGGTGAGAAAAAAGATTTGTATGTTAAGAGCGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTAGAGGATGTGCCTTGTGGGAACACTGTTGCCATGGTTGGGTTGGATCAATTTATCACTAAGAATGCCACTCTGACTAATGAAAAGGAAGTTGATGCT | 1389 | 44.49 | MDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSDEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPAKAQKYRVENLYEGPLDDAYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDA | 463 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 23495891 | 23497556 | - | MELO3C019668.2.1 | Cme11g01583 | 342246 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01583 | 463 | PRINTS | GTP-binding elongation factor signature | 89 | 99 | IPR000795 | GO:0003924|GO:0005525 | |
Cme11g01583 | 463 | PRINTS | GTP-binding elongation factor signature | 141 | 150 | IPR000795 | GO:0003924|GO:0005525 | |
Cme11g01583 | 463 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924|GO:0005525 | |
Cme11g01583 | 463 | PRINTS | GTP-binding elongation factor signature | 53 | 61 | IPR000795 | GO:0003924|GO:0005525 | |
Cme11g01583 | 463 | PRINTS | GTP-binding elongation factor signature | 105 | 116 | IPR000795 | GO:0003924|GO:0005525 | |
Cme11g01583 | 463 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 329 | IPR027417 | - | |
Cme11g01583 | 463 | Pfam | Elongation factor Tu GTP binding domain | 5 | 330 | IPR000795 | GO:0003924|GO:0005525 | |
Cme11g01583 | 463 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 46 | 61 | IPR031157 | - | |
Cme11g01583 | 463 | CDD | EF2_II | 363 | 458 | - | - | |
Cme11g01583 | 463 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 332 | IPR000795 | GO:0003924|GO:0005525 | |
Cme11g01583 | 463 | Gene3D | - | 1 | 225 | IPR027417 | - | |
Cme11g01583 | 463 | PANTHER | BNAC03G76150D PROTEIN | 10 | 463 | - | - | |
Cme11g01583 | 463 | TIGRFAM | small_GTP: small GTP-binding protein domain | 8 | 164 | IPR005225 | GO:0005525 | |
Cme11g01583 | 463 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 10 | 463 | - | - | |
Cme11g01583 | 463 | Pfam | Elongation factor Tu domain 2 | 382 | 455 | IPR004161 | GO:0005525 | |
Cme11g01583 | 463 | Gene3D | Translation factors | 331 | 463 | - | - | |
Cme11g01583 | 463 | CDD | EF2 | 8 | 218 | - | - | |
Cme11g01583 | 463 | SUPERFAMILY | Translation proteins | 330 | 459 | IPR009000 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g01847 | Cme-Chr5:27274435 | Cme11g01583 | Cme-Chr11:23495891 | 1.06E-96 | dispersed | |
Cme11g01544 | Cme-Chr11:22944435 | Cme11g01583 | Cme-Chr11:23495891 | 0 | dispersed | |
Cme11g01547 | Cme-Chr11:22993916 | Cme11g01583 | Cme-Chr11:23495891 | 0 | dispersed | |
Cme11g01583 | Cme-Chr11:23495891 | Cme11g02286 | Cme-Chr11:29925134 | 1.05E-17 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01583 | K03234 | - | csv:101209544 | 921.768 |