Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01583 ATGGACTACAAGCATAACATTCGTAATATGTCTGTTATTGCTCATGTCGATCATGGGAAGTCCACTCTTACAGATTCTCTTGTGGCTGCTGCTGGTATCATTGCTCAAGAAGTTGCAGGTGATGTTCGTATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCTCTCTATTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAGTATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTACGTATTACTGATGGTGCCCTTGTTGTGGTGGATTGCATCGAAGGTGTTTGTGTCCAAACAGAGACTGTGCTCCGTCAGGCTTTGGGAGAAAGGATTAGACCTGTCCTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAAGTAGATGGAGAAGAGGCTTATCAAACATTCCAGAGGGTCATTGAGAATGCCAATGTGATTATGGCCACTTATGAGGATCCACTTCTTGGCGATGTTCAAGTGTACCCCGAGAAAGGAACAGTTGCTTTCTCTGCTGGTTTGCACGGTTGGGCATTTACCCTGACAAACTTTGCCAAGATGTATGCCTCCAAGTTTGGAGTAGATGAGGCAAAGATGATGGAGAGACTTTGGGGTGAGAATTTCTTTGATCCTGCAACCAAGAAGTGGACCAGCAAGAATACTGGCTCACCAACTTGCAAGCGTGGGTTTGTCCAGTTCTGCTACGAACCTATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAAGACAAGCTATGGCCCATGTTGCAGAAGCTTGGTGTTGTCATGAAGTCTGATGAGAAGGATCTGATGGGCAAACCATTGATGAAGCGGGTCATGCAAACATGGCTACCAGCAAGTACTGCTCTCTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCAAGGCCCAAAAGTATCGTGTGGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCTAGTGCCATTAGAAATTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCTGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTGTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATCATGGGCCCCAACTATGTTCCTGGTGAGAAAAAAGATTTGTATGTTAAGAGCGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTAGAGGATGTGCCTTGTGGGAACACTGTTGCCATGGTTGGGTTGGATCAATTTATCACTAAGAATGCCACTCTGACTAATGAAAAGGAAGTTGATGCT 1389 44.49 MDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSDEKDLMGKPLMKRVMQTWLPASTALLEMMIFHLPSPAKAQKYRVENLYEGPLDDAYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDA 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23495891 23497556 - MELO3C019668.2.1 Cme11g01583 342246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01583 463 PRINTS GTP-binding elongation factor signature 89 99 IPR000795 GO:0003924|GO:0005525
Cme11g01583 463 PRINTS GTP-binding elongation factor signature 141 150 IPR000795 GO:0003924|GO:0005525
Cme11g01583 463 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cme11g01583 463 PRINTS GTP-binding elongation factor signature 53 61 IPR000795 GO:0003924|GO:0005525
Cme11g01583 463 PRINTS GTP-binding elongation factor signature 105 116 IPR000795 GO:0003924|GO:0005525
Cme11g01583 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 329 IPR027417 -
Cme11g01583 463 Pfam Elongation factor Tu GTP binding domain 5 330 IPR000795 GO:0003924|GO:0005525
Cme11g01583 463 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 IPR031157 -
Cme11g01583 463 CDD EF2_II 363 458 - -
Cme11g01583 463 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 332 IPR000795 GO:0003924|GO:0005525
Cme11g01583 463 Gene3D - 1 225 IPR027417 -
Cme11g01583 463 PANTHER BNAC03G76150D PROTEIN 10 463 - -
Cme11g01583 463 TIGRFAM small_GTP: small GTP-binding protein domain 8 164 IPR005225 GO:0005525
Cme11g01583 463 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 10 463 - -
Cme11g01583 463 Pfam Elongation factor Tu domain 2 382 455 IPR004161 GO:0005525
Cme11g01583 463 Gene3D Translation factors 331 463 - -
Cme11g01583 463 CDD EF2 8 218 - -
Cme11g01583 463 SUPERFAMILY Translation proteins 330 459 IPR009000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01847 Cme-Chr5:27274435 Cme11g01583 Cme-Chr11:23495891 1.06E-96 dispersed
Cme11g01544 Cme-Chr11:22944435 Cme11g01583 Cme-Chr11:23495891 0 dispersed
Cme11g01547 Cme-Chr11:22993916 Cme11g01583 Cme-Chr11:23495891 0 dispersed
Cme11g01583 Cme-Chr11:23495891 Cme11g02286 Cme-Chr11:29925134 1.05E-17 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01583 K03234 - csv:101209544 921.768