Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01584 ATGAGGGAGTGCTATCGGTTTGCCTTCCTAGTGGTGTTTGCATGGTTCCTGAAAGGCTTGAATGCTAGTGCAGGAGATATTGACCCACAGTACAGAACTTGTGTTAAACACTGTGAAGAAATAGGATGCATTGATCAGCAATGCTTTCCTCAGTGCAAATTCTCTTCGGATGGTGTTTCTGTTGATCAACCATGGTATATGCAAGAACCACTTTACTTAAGGTGGAAACAATGGGATTGCCAGAGTGATTGTCGTTACCATTGCATGGTCAAACGAGAGGGTGAACGAGAAGCACTTGGTTATGATCCTGTTAAATATCATGGTAAATGGCCCTTCAAGCGTTTATATGGGATCCAGGAACCTGTTTCTGTTGCATTCTCTGCCCTCAACCTTTCAATGCATTTTCATGGCTGGCTGTCCTTTTTTATCCTTCTATATTACAAATTACCTTTGAAACAAGACAAGAAGGCATACTATGAATTTGCCAGTTTGTGGCACATTTATGCACTCTTTTCAATGAACTCTTGGTTTTGGAGTGCTGTTTTCCATAGTCGTGACGTGGATTTGACCGAGAAATTAGATTACTCATCTGCCGTGGCAGTACTTGGGTTTTCACTCATTCTGGCGATTCTAAGAAGTTTTAATGTGAGACATGAGGCTACTAGAGTCATGGTTGCAGCTCCTTTGCTTGCATTTGCACTTACACATATCTTATACATCAACTTCTACGAACTGGATTATGGGTGGAACATGATTGTTTGTGTTACCATGGGGGTTTCTCAACTTCTAATATGGGCAATCTGGGCTGGTGTAACTCATCATCCTTCTCGCTGGAAACTGTGGACAGTGGTTGTGGGAGGTGGCTTAGCTCTACTACTGGAAATCTATGATTTTCCACCATATGAAGGCTTTGTAGATGCTCATGCTCTTTGGCATGCCACTACCATCCCTCTCACCTATATTTGGTGGAGTTTTATCAGAGATGATGCTGAGTTTCAAACCTCTAATCTCCTCAAGAAATCCAAATAG 1029 42.08 MRECYRFAFLVVFAWFLKGLNASAGDIDPQYRTCVKHCEEIGCIDQQCFPQCKFSSDGVSVDQPWYMQEPLYLRWKQWDCQSDCRYHCMVKREGEREALGYDPVKYHGKWPFKRLYGIQEPVSVAFSALNLSMHFHGWLSFFILLYYKLPLKQDKKAYYEFASLWHIYALFSMNSWFWSAVFHSRDVDLTEKLDYSSAVAVLGFSLILAILRSFNVRHEATRVMVAAPLLAFALTHILYINFYELDYGWNMIVCVTMGVSQLLIWAIWAGVTHHPSRWKLWTVVVGGGLALLLEIYDFPPYEGFVDAHALWHATTIPLTYIWWSFIRDDAEFQTSNLLKKSK 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 23501127 23505435 - MELO3C019667.2.1 Cme11g01584 342247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01584 342 PANTHER POST-GPI ATTACHMENT TO PROTEINS FACTOR 3 6 342 - -
Cme11g01584 342 Pfam Per1-like family 70 330 IPR007217 GO:0006506
Cme11g01584 342 PANTHER PER1-RELATED 6 342 IPR007217 GO:0006506
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01584 K23553 PGAP3, PER1; post-GPI attachment to proteins factor 3 - csv:101218465 718.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00958 Cme-Chr6:6820460 Cme11g01584 Cme-Chr11:23501127 1.83E-138 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1016 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g01584 . . . . . . . . Sed01g0744 . . . . . . . . Bhi10g00975 Tan05g0615 Cmetu11g2544 . Hepe08g0625 . . . . . . . . . . Csa06g01176 Chy11g01016 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001566 2 2 2 2 2 2 3 2 2 1 1 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 6 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01584 Cme_Chr11 FPKM 14.744328 16.569756 26.025379 26.502907 10.301767 10.90584 9.218411 20.897011 20.435291 19.637209