Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01623 ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTCGAGAGCAGCGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGTAAACAGCTTGGAGACGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTCATCTGTAA 465 46.02 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGHL 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24006351 24009051 + MELO3C019642.2.1 Cme11g01623 342286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01623 154 Gene3D - 1 77 - -
Cme11g01623 154 Gene3D - 78 154 - -
Cme11g01623 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Cme11g01623 154 SUPERFAMILY Ubiquitin-like 79 153 IPR029071 -
Cme11g01623 154 PANTHER - 1 152 - -
Cme11g01623 154 PANTHER UBIQUITIN 1 152 - -
Cme11g01623 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Cme11g01623 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Cme11g01623 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Cme11g01623 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Cme11g01623 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Cme11g01623 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Cme11g01623 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Cme11g01623 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Cme11g01623 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Cme11g01623 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Cme11g01623 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Cme11g01623 154 CDD Ubl_ubiquitin 1 76 - -
Cme11g01623 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00548 Cme-Chr5:5328364 Cme11g01623 Cme-Chr11:24006351 4.84E-10 dispersed
Cme08g00382 Cme-Chr8:2380830 Cme11g01623 Cme-Chr11:24006351 8.01E-21 dispersed
Cme09g02013 Cme-Chr9:23840823 Cme11g01623 Cme-Chr11:24006351 3.04E-27 dispersed
Cme10g00268 Cme-Chr10:1754265 Cme11g01623 Cme-Chr11:24006351 2.36E-06 dispersed
Cme11g01623 Cme-Chr11:24006351 Cme11g02419 Cme-Chr11:31015808 1.01E-11 dispersed
Cme11g01623 Cme-Chr11:24006351 Cme01g00412 Cme-Chr1:2914466 3.27E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01623 K12158 - csv:101214716 291.967