Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01629 ATGGATGTTGCAACCCGTTACAGACCCAACGAACTTCTATCTCCCGCCACTCCGTTCCTCCAACAATCTCAAAATGTGATTCTTTTCACTCTTCCGGCCAAGCGGCGAGCTAAATACTCCCGTCAGAGGGCAAAATTTCGAGTTCGAGGATCCGCCGATGGTAATGCAGCTGATCAGTCTCCTTGGGAAAGTTTCAGTAGGTCAGTTCGTCGTGGGTCCGAGAGATTCTGGTTGAATTTTGGCAAGTCTATTAGAAAGGAAACTGGGTTTGATTTGAAAAATACTGATGGGAGGTTGGTTGAGTTTTTTGCGGGGGCGAATGAACGGTTAGAGAATATGGGAACTGAGCTGCAGAGGTTGAAGAATGAAACTTTTCCGGAATTTATAAACTGGAATCGTTGGGATCGCTGGAAGGCCTTCAAGAACTGGGAGCCAAAACGAGTGGGTGCTCTGTTTCTCTATGCTCTTGTGATGATTGTTTCTTGTCAAAGAATTTATATGGCAGTTCGAGCGCCATTCGTAAATCGCGAAAGACTAAAGCTAACAGAGGCTTATATGGAGGCATTGATTCCTGAGCCGTCTCCTAATAATATTAGAAAGTTTAAGAAAGGGTTATGGAGGAAAACAACGCCTAAAGGTCTGAAAATAAAGAAATTTATTGAAGGTACTGACGGAACCCTTGTTAAAGATTCTTCTTATGTTGGAGAAGATGCATGGGATGATGATTCAGAGCTTCTGCAAGATAATGTTAAAAAGATTATTGACGGCGATGAAAAAGTTAAGGGTGATGAAAAGGAGAAGATAAAGGCACAATTGGGGATATCAGGACAAAAGGACTCTGGAACTTGGCGTGAAAGGCTACAAGCATGGAGGGAGATCCTTAGGAAAGAGAAATTAACTGAAGATATAGATTCTCTGCGTGCTAAATATGTTGTTGAATTCGACATGAAAGAGGTTGAAAAGAGTCTTCGTAAGGACGTGGTAGAAAAAAAAACAGATACTCAAGGAACAAGGGGACTTTGGGTATCTAAGAGATGGTGGTATTATCGACCTAAACTTCCTTACACATACTTTCTTGACAAACTTGATTCCTCTGAGGTTGCTGCCGTTGTCTTCACTGAGGACTTGAAAAGATTGTATGTAACAATGAAAGAAGGTTTTCCATTAGAATATACTGTTGATATTCCCCTTGATCCTCACTTGTTTGAGGCTATCACCAGTTCTGGAGTTGAAGTTGATCTTCTTGAAAAGCGCCAAATCCATTATTTTCTCAAAGTTCTGATTGCATTGCTGCCTGGAATATTGATCCTTTGGTTCATCAGAGAGTCTGTTATGCTTCTAAGTATTACTACTAAGCGGCTTCTTTATAAAAAGTACCAACAACTTTTTGACATGGAAAATACAGAAAACTTTATCCTGCCAGTCGGGAATGTTGGTGAAACAACATCAATGCACAAGGATGTAGTTTTGGGTGGTGATGCTTGGGGTCTTCTTGATGAATTGATGATTTATATGCGGAATCCTATGCAGTACTATGATAAAAGGGTGCCATTTGTGCGGGGTGTTCTTCTTTCTGGACCTCCAGGTACTGGGAAAACACTTTTCGCGAGGACACTGTCCAAGGAAAGTGGATTGCCCTTTGTGTTTGCATCAGGGGCAGAGTTTACAGATAGTGAAAAAAGTGGGGCAGCAATGATCAATGAGATGTTTTCTACTGCAAGAAGAAATGCTCCATCATTTGTTTTTGTTGATGAAATTGATGCCATTGCTGGAAGGCATGCGAGAAATGATCCAAGAAGAAGGGCAACTTTTGATGCTTTGATTTCCCAACTTGACGGCGAGAAGGAAACCACTGGTATTGACCGGTTCTCACTTAGACAAGCTGTGATATTCATCTGTGCAACCAATAGGCCTGATGAGTTAGACATAGAATTTGTTCGTCCTGGACGCATTGATCGTCGCTTGTACATAGGATTGCCAGATACAAAACAGAGAGTGCAAATATTTGGTGTGCACAGTGCAGGAAAGCAACTTGCAGAGGACGTTGATTTTGGGAAGCTTGTCTTCCGCACAGTTGGTTTTTCTGGAGCAGATATACGGAATCTTGTCAATGAGGCGGCGATAATGTCGGTGAGGAAGGGACATTCTAGGATCAACCAACAAGACATTGTTGATGTTTTAGACAAACAACTGCTTGAGGGTATGGGTGTACTTCTCACCGAAGAAGAGCAACAGAAATGTGAAGAAAGAGTGTCCTTAGAAAAAAGGAGACTGCTGGCTGTACATGAAGCTGGTCATATATTGTTAGCACACTTGTTTCCTCGTTTTGATTGGCATGCCTTTTCTCAGCTTCTACCAGGGGGCAAGGAAACGGCAATTTCTGTTTTCTTCCCTCGAGAAGATATGGTTGATCAAGGTTACATCACCTTTGGTTACATGAAAATGCAAATGGTAGTTGCTCATGGAGGACGCTGTGCTGAACGTCTTATATTTGGTAACGACATAACTGATGGAGGAAAGGATGACCTAGAAAAGATAACAAAGATTGCTAGGGAGATGGTAATTAGTCCTCAGAATTCAAGACTTGGGCTTGCTGCTTTAACCAAGAGGATCGGGATGCCGGATCAGACAGATAATCCAGATGGCGAATTGATTAGATATAGGTGGGATGATCCTCGAGTGATTCCGGCCAACATGACACTTGAATTGTCTGAGTTATTTTCACGGGAGTTGACAAGGTATATTGAAGAGACGGAAGAATTGGCGATGAACGGTTTGAGGGAAAACAGGCACATACTGGATATGATTGCTGAGGAACTACTGTTTAAGACTAGAATAACTGGGTTGGAAGTTATAGAGAAAATGAAGGACCTGTCGCCATCCATGTTCGAGGACTTCGTCAAGCCATTTCAGATAGACTTGGATGTGGAGGGAGCACTGCCACATAAGGATAAACTGCGATTCCAACCTCTAGACATCTACCCCGCGCCGCTGCACAGATGTTAA 3006 42.45 MDVATRYRPNELLSPATPFLQQSQNVILFTLPAKRRAKYSRQRAKFRVRGSADGNAADQSPWESFSRSVRRGSERFWLNFGKSIRKETGFDLKNTDGRLVEFFAGANERLENMGTELQRLKNETFPEFINWNRWDRWKAFKNWEPKRVGALFLYALVMIVSCQRIYMAVRAPFVNRERLKLTEAYMEALIPEPSPNNIRKFKKGLWRKTTPKGLKIKKFIEGTDGTLVKDSSYVGEDAWDDDSELLQDNVKKIIDGDEKVKGDEKEKIKAQLGISGQKDSGTWRERLQAWREILRKEKLTEDIDSLRAKYVVEFDMKEVEKSLRKDVVEKKTDTQGTRGLWVSKRWWYYRPKLPYTYFLDKLDSSEVAAVVFTEDLKRLYVTMKEGFPLEYTVDIPLDPHLFEAITSSGVEVDLLEKRQIHYFLKVLIALLPGILILWFIRESVMLLSITTKRLLYKKYQQLFDMENTENFILPVGNVGETTSMHKDVVLGGDAWGLLDELMIYMRNPMQYYDKRVPFVRGVLLSGPPGTGKTLFARTLSKESGLPFVFASGAEFTDSEKSGAAMINEMFSTARRNAPSFVFVDEIDAIAGRHARNDPRRRATFDALISQLDGEKETTGIDRFSLRQAVIFICATNRPDELDIEFVRPGRIDRRLYIGLPDTKQRVQIFGVHSAGKQLAEDVDFGKLVFRTVGFSGADIRNLVNEAAIMSVRKGHSRINQQDIVDVLDKQLLEGMGVLLTEEEQQKCEERVSLEKRRLLAVHEAGHILLAHLFPRFDWHAFSQLLPGGKETAISVFFPREDMVDQGYITFGYMKMQMVVAHGGRCAERLIFGNDITDGGKDDLEKITKIAREMVISPQNSRLGLAALTKRIGMPDQTDNPDGELIRYRWDDPRVIPANMTLELSELFSRELTRYIEETEELAMNGLRENRHILDMIAEELLFKTRITGLEVIEKMKDLSPSMFEDFVKPFQIDLDVEGALPHKDKLRFQPLDIYPAPLHRC 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24153346 24169546 - MELO3C019635.2.1 Cme11g01629 342292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01629 1001 PANTHER ATP-DEPENDENT PROTEASE 7 1001 - -
Cme11g01629 1001 Pfam AAA+ lid domain 681 723 IPR041569 -
Cme11g01629 1001 SMART AAA_5 518 661 IPR003593 -
Cme11g01629 1001 Gene3D - 479 660 IPR027417 -
Cme11g01629 1001 Gene3D - 661 734 - -
Cme11g01629 1001 Pfam Peptidase family M41 751 951 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cme11g01629 1001 Pfam ATPase family associated with various cellular activities (AAA) 522 658 IPR003959 GO:0005524|GO:0016887
Cme11g01629 1001 CDD AAA 520 659 - -
Cme11g01629 1001 Coils Coil 103 123 - -
Cme11g01629 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 729 IPR027417 -
Cme11g01629 1001 Gene3D Peptidase M41 744 959 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cme11g01629 1001 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 7 1001 - -
Cme11g01629 1001 SUPERFAMILY FtsH protease domain-like 754 964 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01629 Cme-Chr11:24153346 Cme07g00069 Cme-Chr7:437672 1.98E-80 dispersed
Cme11g01629 Cme-Chr11:24153346 Cme08g02417 Cme-Chr8:31039171 2.68E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01629 K03798 - csv:101215439 1852.41