Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01634 ATGGCTTTCTCATCCTCCTTTGCTCGATCTACCGTTTCCTCTTCTCTGATCGAGGCTTCTCGTTCCGACTTTTCGCCGTCTGATTGCCGGAAGGCTTCATTCGTCGGGAGCTCTTTAAAGCTTCAATCTGGTGTTTTCGGAACTACTGTCTCGAGTGGGGTGTCTTCTTTACAGTTGAGGTCATCTAGTAATCGAACTGTCCAACCCATCAAAGCTACGGCCACTGAGGCGCCTCCAGCGATTCAAAAAACTCCGAGCAGTGGGAAGACCAAGATTGGAATCAATGGCTTTGGTCGAATCGGAAGACTGGTATTGCGAGTTGCAACCTCCAGAGATGATATCGATGTTGTAGCAGTTAATGATCCATTTGTTGATGCCAAGTACATGGCTTACATGTTCAAATACGATTCTAGTCATGGTGTTTTCAACGGAACCATCAAGGTTCTCAATGATTCTACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTAGGCAAAAGGGACCCTGCAGATATCCCATGGGGTGATTATGGGGCTGAATACGTCGTTGAGTCCTCTGGAGTTTTCACTACAAAAGAGAAGGCTTCAGCACATTTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAATGAAAAAACTTACAAGCCGGCAATGGATATTGTTTCCAACGCAAGTTGTACTACCAATTGTCTTGCACCTCTTGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACAGTGCATGCAACAACAGCCACACAAAAGACTGTTGATGGCCCTTCAATGAAGGATTGGAGAGGTGGCCGTGGTGCTGCGCAAAATATAATTCCTAGCTCTACTGGTGCGGCCAAGGCTGTTGGGAAAGTTCTGCCAGAGCTAAATGGAAAGCTTACTGGAATGGCCTTCCGTGTGCCAACACCTAATGTATCTGTTGTGGACTTAACTTGCCGACTTGAAAAGAGTGCTTCTTATGAAGATGTAAAGGCAGCAGTAAAGTATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACTGATTTTCTTGGTGACTCGAGGTCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTTGGTACCTCATTCATGAAGCTGGTGACTTGGTACGACAATGAATGGGGATACAGCACCCGAGTACTGGACCTTATCGAGCACATGGCAATGGTGTCAGCCTTAAACTAA 1278 45.23 MAFSSSFARSTVSSSLIEASRSDFSPSDCRKASFVGSSLKLQSGVFGTTVSSGVSSLQLRSSSNRTVQPIKATATEAPPAIQKTPSSGKTKIGINGFGRIGRLVLRVATSRDDIDVVAVNDPFVDAKYMAYMFKYDSSHGVFNGTIKVLNDSTLEINGKQIKVVGKRDPADIPWGDYGAEYVVESSGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPAMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLGTSFMKLVTWYDNEWGYSTRVLDLIEHMAMVSALN 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24221845 24226640 + MELO3C019633.2.1 Cme11g01634 342297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01634 425 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 91 413 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Cme11g01634 425 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 192 IPR020828 GO:0051287
Cme11g01634 425 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 90 259 IPR036291 -
Cme11g01634 425 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287
Cme11g01634 425 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 9 423 - -
Cme11g01634 425 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 401 IPR020829 GO:0016620
Cme11g01634 425 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 9 423 IPR020831 GO:0016620
Cme11g01634 425 Gene3D - 91 418 - -
Cme11g01634 425 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 401 - -
Cme11g01634 425 Gene3D Dihydrodipicolinate Reductase; domain 2 239 405 - -
Cme11g01634 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620
Cme11g01634 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620
Cme11g01634 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620
Cme11g01634 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620
Cme11g01634 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620
Cme11g01634 425 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g01504 Cme11g01634 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01634 Cme-Chr11:24221845 Cme12g01611 Cme-Chr12:23338297 0 dispersed
Cme03g00163 Cme-Chr3:2051400 Cme11g01634 Cme-Chr11:24221845 9.65E-161 transposed
Cme06g01975 Cme-Chr6:24030646 Cme11g01634 Cme-Chr11:24221845 1.42E-107 transposed
Cme07g00039 Cme-Chr7:246226 Cme11g01634 Cme-Chr11:24221845 2.26E-112 transposed
Cme01g01504 Cme-Chr1:19812082 Cme11g01634 Cme-Chr11:24221845 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01634 K00134 - csv:101203472 788.875