Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01637 ATGCTGCACCTTCAATCCCGCTTGATAAAGTCTCTTTCAATTTCTTCTTCACCGGCCGCCTCCACAATCCAAGAAATTGCTACTGCCTGCCCCAAAGGTTTGGCTAAGGTTGTGCTGAAGAAGGGGAAGGCACAGCTTTTCAAAGATGGGAGCCCAATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGAAGGCCACCACCAAAAACTGGAGATGTTGTTCTGGTAGCTGATGGGACTGAAAAACCTATAGGATGGGGTCTGTATAATTCAGTTTCTATGTTCTCTGTTAGATTAATGCAGTTGGAAGAAGAGGCAGCTAGTGACCCTTCCTGCACATTAAATGTTGAGAAGATGATTGAAACAAGGATACATACTGCTAGAGAATTACGAAAGAACTTGGGACTTCCGTCAGCTAGTACTAATGCTTATCGTCTTGTTAATAGTGAAGGAGACAGATTGTCAGGACTAATTATCGATGTCTTTGGAGATTTAGCAGTGGTAGCATCATCTGCTGCTTGGGTGGAGAAGTACAAAGCTGAAATAGAGGATTGTGTCCGTGGAATTGAAGAAATCAACCATGTGAAATGGAGACCATCGGTGGACATTCTGAAAGAAGAAGGTATAGATGTGTCTGAATTAAAGGAGACAAGTCCGTCTACTTGTCCTGAAAGAACAAAGGTGAAGGAGAATGGCATTTTTTATACCATCTCACTTGAAGGCCAGAAAACAGGTTTTTATGCTGATCAGCGTGAAAATCGTCATTTTATCTCAACAATTTCGGAGGGTCAGAAAGTTCTTGATCTCTGCTGCTACAGTGGTGGGTTTTCTCTAAATGCATTACGTGGTGGAGCAATTAATGTCACCGGTATTGATTCATCATTGCCTGCTCTGGAGCTAGCAAAAGAAAATGTGGTCCTTAATAGCATGGATCCGGAAAGAATATCATTTCTGAAAGCGGATGCCACAGCATTTATGAAGGATGCCCTATCTAGGAATGAATCTTGGGATATAGTCATTTTGGATCCTCCTAAACTAGCACCACGGAAAAAGGGTTGTTTACGCCTTCAAGTTCATTGA 1080 42.22 MLHLQSRLIKSLSISSSPAASTIQEIATACPKGLAKVVLKKGKAQLFKDGSPMVYSGAVDRIIGRPPPKTGDVVLVADGTEKPIGWGLYNSVSMFSVRLMQLEEEAASDPSCTLNVEKMIETRIHTARELRKNLGLPSASTNAYRLVNSEGDRLSGLIIDVFGDLAVVASSAAWVEKYKAEIEDCVRGIEEINHVKWRPSVDILKEEGIDVSELKETSPSTCPERTKVKENGIFYTISLEGQKTGFYADQRENRHFISTISEGQKVLDLCCYSGGFSLNALRGGAINVTGIDSSLPALELAKENVVLNSMDPERISFLKADATAFMKDALSRNESWDIVILDPPKLAPRKKGCLRLQVH 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24236403 24240771 + MELO3C019630.2.1 Cme11g01637 342300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01637 359 ProSiteProfiles PUA domain profile. 34 90 - -
Cme11g01637 359 SUPERFAMILY PUA domain-like 36 104 IPR015947 -
Cme11g01637 359 Pfam S-adenosylmethionine-dependent methyltransferase 224 346 IPR019614 GO:0008168
Cme11g01637 359 Gene3D PUA domain 34 105 IPR036974 GO:0003723
Cme11g01637 359 Pfam PUA-like domain 37 100 IPR041532 -
Cme11g01637 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 351 IPR029063 -
Cme11g01637 359 Gene3D Vaccinia Virus protein VP39 226 358 IPR029063 -
Cme11g01637 359 Gene3D RNA methyltransferase domain (HRMD) like 116 217 - -
Cme11g01637 359 CDD AdoMet_MTases 265 344 - -
Cme11g01637 359 CDD RlmI_M_like 120 213 - -
Cme11g01637 359 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 19 351 - -
Cme11g01637 359 SMART pua_5 35 115 IPR002478 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01637 - - - csv:101215914 643.269
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1166 . . . . . . . . . . . . . . . . Cpe16g00706 . . . . . . . Cla02g01830 Cam02g1939 Cec02g1966 Cco02g2005 Clacu02g1919 Cmu02g1868 Cre02g2181 . . . . . . . Cme11g01637 . . . . . . . . . . . . . . . . . Bhi10g00931 . . . . . . . . . . . . . . Csa06g01148 Chy11g01044 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010611 1 3 1 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01637 Cme_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0