Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01643 | ATGATCATGACGGTCACTGCTAGAGTAATCGCAGCAGCTCGATCATTGGTTCCATCGAGCCAGTTCCCTCTTCTACGTCCATCTTCTTATGTGTTCGCTGCCCAGAAATCTCACTCCCACACCCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCACTACTCGTCTTCACAGTTCTGGATTATTAAGAAGCCAAGGTCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCAAAATCCAGCTAATGGTGAAGTTATAACCAATGTTCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGACGCTTTTAAGTCTTGGAGCAAACTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATGGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGAAAACCCTTAAAGGAAGCTTTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAAGAAGCAAAGCGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGCGTCATTACCCCTTGGAACTTTCCGCTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCAAGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTGGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCTCCAGGTGTCGTGAATGTGGTTATGGGAGATGCTTCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACATTTACCGGCTCAACTGCAGTTGGAAAAAAGTTGATGGCAGGTGCTGCTGGAACTGTTAAAAGGGTGTCCCTTGAACTTGGTGGTAATGCCCCTTGCATAATATTTGACGATGCAGATGTGGATGTTGCAGTAAAAGGATCTATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGAATATACGAGAAATTTACAAATGCTTTCTCAAAAGCGGTGCAAAATCTGCAAGTTGGTGACGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCGGAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTGTTGCTGGCGTGAAAAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCGCCATTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAACGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCGTGGAGAGTGACTGAAGCTCTCGAATATGGAATGGTCGGTGTTAATGAAGGCCTAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCAGGCCTTGGAAGGGAGGGGTCGAAATATGGGATGGACGAGTATCTTGAGTTGAAATATGTTTGCTTGGGGAATATGGACCGCCAATGA | 1626 | 45.63 | MIMTVTARVIAAARSLVPSSQFPLLRPSSYVFAAQKSHSHTLLIRQMSSEAQSITTRLHSSGLLRSQGLIGGKWIDAYDGKTIEVQNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLMAHKEEIGQLITLEQGKPLKEALGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLLVLKQPVGVVGVITPWNFPLAMITRKVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDASAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADVDVAVKGSIAAKFRNSGQTCVCANRILVQEGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAEVLLGGKRHSLGMTFFEPTVVAGVKSDMLLSREEVFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMDRQ | 541 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24293435 | 24310356 | + | MELO3C019622.2.1 | Cme11g01643 | 342306 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01643 | 541 | CDD | ALDH_F5_SSADH_GabD | 85 | 535 | - | - | |
Cme11g01643 | 541 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 313 | 502 | IPR016163 | GO:0016620 | |
Cme11g01643 | 541 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 309 | 316 | IPR029510 | GO:0016491 | |
Cme11g01643 | 541 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 337 | 348 | IPR016160 | GO:0016491 | |
Cme11g01643 | 541 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 61 | 538 | - | - | |
Cme11g01643 | 541 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 61 | 538 | - | - | |
Cme11g01643 | 541 | TIGRFAM | SSADH: succinate-semialdehyde dehydrogenase | 85 | 531 | IPR010102 | GO:0009013|GO:0009450 | |
Cme11g01643 | 541 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 80 | 527 | IPR016162 | GO:0016491 | |
Cme11g01643 | 541 | SUPERFAMILY | ALDH-like | 61 | 539 | IPR016161 | GO:0016491 | |
Cme11g01643 | 541 | Pfam | Aldehyde dehydrogenase family | 74 | 533 | IPR015590 | GO:0016491 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g02802 | Cme-Chr1:35035295 | Cme11g01643 | Cme-Chr11:24293435 | 2.13E-52 | dispersed | |
Cme05g01785 | Cme-Chr5:26836976 | Cme11g01643 | Cme-Chr11:24293435 | 4.33E-57 | dispersed | |
Cme05g01834 | Cme-Chr5:27189967 | Cme11g01643 | Cme-Chr11:24293435 | 1.10E-56 | dispersed | |
Cme08g00717 | Cme-Chr8:4771511 | Cme11g01643 | Cme-Chr11:24293435 | 2.19E-45 | dispersed | |
Cme11g01643 | Cme-Chr11:24293435 | Cme11g02077 | Cme-Chr11:28446761 | 4.23E-55 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01643 | K17761 | - | csv:101217352 | 1012.68 |