Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01643 ATGATCATGACGGTCACTGCTAGAGTAATCGCAGCAGCTCGATCATTGGTTCCATCGAGCCAGTTCCCTCTTCTACGTCCATCTTCTTATGTGTTCGCTGCCCAGAAATCTCACTCCCACACCCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCACTACTCGTCTTCACAGTTCTGGATTATTAAGAAGCCAAGGTCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCAAAATCCAGCTAATGGTGAAGTTATAACCAATGTTCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGACGCTTTTAAGTCTTGGAGCAAACTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATGGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGAAAACCCTTAAAGGAAGCTTTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAAGAAGCAAAGCGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGCGTCATTACCCCTTGGAACTTTCCGCTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCAAGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTGGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCTCCAGGTGTCGTGAATGTGGTTATGGGAGATGCTTCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACATTTACCGGCTCAACTGCAGTTGGAAAAAAGTTGATGGCAGGTGCTGCTGGAACTGTTAAAAGGGTGTCCCTTGAACTTGGTGGTAATGCCCCTTGCATAATATTTGACGATGCAGATGTGGATGTTGCAGTAAAAGGATCTATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGAATATACGAGAAATTTACAAATGCTTTCTCAAAAGCGGTGCAAAATCTGCAAGTTGGTGACGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCGGAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTGTTGCTGGCGTGAAAAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCGCCATTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAACGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCGTGGAGAGTGACTGAAGCTCTCGAATATGGAATGGTCGGTGTTAATGAAGGCCTAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCAGGCCTTGGAAGGGAGGGGTCGAAATATGGGATGGACGAGTATCTTGAGTTGAAATATGTTTGCTTGGGGAATATGGACCGCCAATGA 1626 45.63 MIMTVTARVIAAARSLVPSSQFPLLRPSSYVFAAQKSHSHTLLIRQMSSEAQSITTRLHSSGLLRSQGLIGGKWIDAYDGKTIEVQNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLMAHKEEIGQLITLEQGKPLKEALGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLLVLKQPVGVVGVITPWNFPLAMITRKVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDASAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADVDVAVKGSIAAKFRNSGQTCVCANRILVQEGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAEVLLGGKRHSLGMTFFEPTVVAGVKSDMLLSREEVFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMDRQ 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24293435 24310356 + MELO3C019622.2.1 Cme11g01643 342306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01643 541 CDD ALDH_F5_SSADH_GabD 85 535 - -
Cme11g01643 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Cme11g01643 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491
Cme11g01643 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491
Cme11g01643 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 61 538 - -
Cme11g01643 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 61 538 - -
Cme11g01643 541 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 85 531 IPR010102 GO:0009013|GO:0009450
Cme11g01643 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 527 IPR016162 GO:0016491
Cme11g01643 541 SUPERFAMILY ALDH-like 61 539 IPR016161 GO:0016491
Cme11g01643 541 Pfam Aldehyde dehydrogenase family 74 533 IPR015590 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02802 Cme-Chr1:35035295 Cme11g01643 Cme-Chr11:24293435 2.13E-52 dispersed
Cme05g01785 Cme-Chr5:26836976 Cme11g01643 Cme-Chr11:24293435 4.33E-57 dispersed
Cme05g01834 Cme-Chr5:27189967 Cme11g01643 Cme-Chr11:24293435 1.10E-56 dispersed
Cme08g00717 Cme-Chr8:4771511 Cme11g01643 Cme-Chr11:24293435 2.19E-45 dispersed
Cme11g01643 Cme-Chr11:24293435 Cme11g02077 Cme-Chr11:28446761 4.23E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01643 K17761 - csv:101217352 1012.68