Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01643 ATGATCATGACGGTCACTGCTAGAGTAATCGCAGCAGCTCGATCATTGGTTCCATCGAGCCAGTTCCCTCTTCTACGTCCATCTTCTTATGTGTTCGCTGCCCAGAAATCTCACTCCCACACCCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCACTACTCGTCTTCACAGTTCTGGATTATTAAGAAGCCAAGGTCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCAAAATCCAGCTAATGGTGAAGTTATAACCAATGTTCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGACGCTTTTAAGTCTTGGAGCAAACTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATGGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGAAAACCCTTAAAGGAAGCTTTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTTTTCTGAAGAAGCAAAGCGAGTATATGGTGACATAATCTCACCAACTATAGCCGATCGTCGACTTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGCGTCATTACCCCTTGGAACTTTCCGCTGGCTATGATTACACGGAAGGTTGGACCTGCTCTTGCAAGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTGGCAGCAGCTGAGCTCTCACTTCAAGCTGGAATTCCTCCAGGTGTCGTGAATGTGGTTATGGGAGATGCTTCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACATTTACCGGCTCAACTGCAGTTGGAAAAAAGTTGATGGCAGGTGCTGCTGGAACTGTTAAAAGGGTGTCCCTTGAACTTGGTGGTAATGCCCCTTGCATAATATTTGACGATGCAGATGTGGATGTTGCAGTAAAAGGATCTATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGAATATACGAGAAATTTACAAATGCTTTCTCAAAAGCGGTGCAAAATCTGCAAGTTGGTGACGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCGGAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTGTTGCTGGCGTGAAAAGTGACATGCTTTTATCCAGGGAGGAAGTATTTGGTCCCGTGGCGCCATTACTGCCATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAACGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCGTGGAGAGTGACTGAAGCTCTCGAATATGGAATGGTCGGTGTTAATGAAGGCCTAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCAGGCCTTGGAAGGGAGGGGTCGAAATATGGGATGGACGAGTATCTTGAGTTGAAATATGTTTGCTTGGGGAATATGGACCGCCAATGA 1626 45.63 MIMTVTARVIAAARSLVPSSQFPLLRPSSYVFAAQKSHSHTLLIRQMSSEAQSITTRLHSSGLLRSQGLIGGKWIDAYDGKTIEVQNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLMAHKEEIGQLITLEQGKPLKEALGETNYGASFIEFFSEEAKRVYGDIISPTIADRRLLVLKQPVGVVGVITPWNFPLAMITRKVGPALASGCTVVIKPSELTPLTALAAAELSLQAGIPPGVVNVVMGDASAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADVDVAVKGSIAAKFRNSGQTCVCANRILVQEGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAEVLLGGKRHSLGMTFFEPTVVAGVKSDMLLSREEVFGPVAPLLPFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMDRQ 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24293435 24310356 + MELO3C019622.2.1 Cme11g01643 342306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01643 541 CDD ALDH_F5_SSADH_GabD 85 535 - -
Cme11g01643 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 313 502 IPR016163 GO:0016620
Cme11g01643 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491
Cme11g01643 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 337 348 IPR016160 GO:0016491
Cme11g01643 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 61 538 - -
Cme11g01643 541 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 61 538 - -
Cme11g01643 541 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 85 531 IPR010102 GO:0009013|GO:0009450
Cme11g01643 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 527 IPR016162 GO:0016491
Cme11g01643 541 SUPERFAMILY ALDH-like 61 539 IPR016161 GO:0016491
Cme11g01643 541 Pfam Aldehyde dehydrogenase family 74 533 IPR015590 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01643 K17761 SSADH; succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] - csv:101217352 1012.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02802 Cme-Chr1:35035295 Cme11g01643 Cme-Chr11:24293435 2.13E-52 dispersed
Cme05g01785 Cme-Chr5:26836976 Cme11g01643 Cme-Chr11:24293435 4.33E-57 dispersed
Cme05g01834 Cme-Chr5:27189967 Cme11g01643 Cme-Chr11:24293435 1.10E-56 dispersed
Cme08g00717 Cme-Chr8:4771511 Cme11g01643 Cme-Chr11:24293435 2.19E-45 dispersed
Cme11g01643 Cme-Chr11:24293435 Cme11g02077 Cme-Chr11:28446761 4.23E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g01337 . 70 566 Aldehyde Dehydrogenase Gene Family AT3G24503 70.9 1.1e-210 729.6
Cme02g01959 . 49 554 Aldehyde Dehydrogenase Gene Family AT3G24503 53.3 8.7e-155 543.9
Cme05g01785 . 53 334 Aldehyde Dehydrogenase Gene Family AT3G24503 56.9 5.8e-90 328.6
Cme02g01959 . 4 554 Aldehyde Dehydrogenase Gene Family AT3G48000 78.0 5.5e-256 880.2
Cme02g01337 . 82 566 Aldehyde Dehydrogenase Gene Family AT3G48000 55.1 1.1e-160 563.5
Cme05g01785 . 1 334 Aldehyde Dehydrogenase Gene Family AT3G48000 77.6 4.1e-150 528.5
Cme02g01959 . 46 403 Aldehyde Dehydrogenase Gene Family AT1G23800 76.3 2.0e-165 578.9
Cme05g01785 . 1 334 Aldehyde Dehydrogenase Gene Family AT1G23800 77.9 1.7e-148 522.7
Cme02g01337 . 82 410 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.6e-101 366.7
Cme07g00835 . 23 519 Aldehyde Dehydrogenase Gene Family AT4G34240 62.0 4.0e-182 634.8
Cme07g00834 . 7 431 Aldehyde Dehydrogenase Gene Family AT4G34240 54.6 2.8e-143 505.8
Cme07g00835 . 107 517 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 2.5e-179 625.2
Cme07g00834 . 80 429 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 2.1e-149 525.8
Cme05g00154 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 2.3e-116 416.0
Cme07g01699 . 1 464 Aldehyde Dehydrogenase Gene Family AT4G36250 61.4 3.0e-176 615.1
Cme05g00154 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.8 1.3e-158 556.6
Cme11g01643 . 37 540 Aldehyde Dehydrogenase Gene Family AT1G79440 76.6 1.4e-232 802.4
Cme01g00184 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.3 1.2e-238 822.8
Cme08g00717 . 196 641 Aldehyde Dehydrogenase Gene Family AT2G14170 59.3 1.4e-159 560.1
Cme02g01936 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.8 3.2e-250 860.9
Cme02g01936 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.1 3.1e-253 870.9
Cme05g01834 . 79 537 Aldehyde Dehydrogenase Gene Family AT2G24270 91.1 6.7e-248 853.2
Cme12g01755 . 21 492 Aldehyde Dehydrogenase Gene Family AT5G62530 76.8 1.4e-222 769.2
Cme11g02077 . 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 75.3 2.8e-269 924.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01643 Cme_Chr11 FPKM 8.049645 10.043612 14.343276 14.745359 16.219183 13.284896 15.052218 22.671173 20.033957 20.399162