Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01645 | ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCAAATGTGTGTTCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCTGTCACTCAACTTGGAGGCCCTGATAAAGCTACCCCTAAGACCATCATGCGGGTTATGGGTGTCAAGGGTCTCACTCTCTACCATCTCAAAAGTCATCTTCAGAAGTTCAGACTTGGAAAGCAACCTCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGCATGAACGAAATGCATATGGAGGTCCAGAGACGACTGCATGAACAAATAGAGGTACAAAGACACCTTCAATTGAGAATCGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGTGAGAATATGGCGGCCGCCACCGCCGGTCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAGCCTTGTCTCAGACGCCGCCATCAAAGACTTCATTTCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCTGAACCCCCACCACCTCCGCCGCCTCTCATTGACTGCCTCAAAAAGCCCAGCCCCTTCATCTCTGGCGCCGGTAAGACCCCCATTTTCTGGCCAGACGATCTCCGGCTCCAAGACCTAGGAACTCCTTCCGCCACCTTAGCACCTGCACCCCCTCCCATCGGTGGCGCACCCGACTTGGACTCTCTACAGTTGGAAATGTATGAATCCAAACCGCCGCCACCAACGCCGCTACTCGCTGTTGGCAACAACGTCATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGACCATCCCCTCCGCGGTCGGGACATTCGGACGAAAGGTTGAATAGTAATAACAATAATAATGGTATGGCTAACAATAACAACCCAACAATGTTACAGCCACAAGGAAGAAATTCTTCATTTGGTTAA | 1089 | 49.77 | MFHATKKPSSMTSHDRQMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSTLMDRSMNEMHMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAATAGPFKTTSNNMGTTTSLVSDAAIKDFISPHHTFPPFQDMNNLFNSEPPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPAPPPIGGAPDLDSLQLEMYESKPPPPTPLLAVGNNVMNEKKFDMTLKLERPSPPRSGHSDERLNSNNNNNGMANNNNPTMLQPQGRNSSFG | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24315395 | 24318702 | + | MELO3C019621.2.1 | Cme11g01645 | 342308 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01645 | 362 | MobiDBLite | consensus disorder prediction | 329 | 362 | - | - | |
Cme11g01645 | 362 | SUPERFAMILY | Homeodomain-like | 32 | 88 | IPR009057 | - | |
Cme11g01645 | 362 | MobiDBLite | consensus disorder prediction | 315 | 362 | - | - | |
Cme11g01645 | 362 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 224 | IPR044848 | GO:0003700 | |
Cme11g01645 | 362 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 33 | 88 | IPR006447 | GO:0003677 | |
Cme11g01645 | 362 | Gene3D | - | 32 | 90 | - | - | |
Cme11g01645 | 362 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 30 | 90 | IPR017930 | - | |
Cme11g01645 | 362 | Pfam | Myb-like DNA-binding domain | 36 | 84 | IPR001005 | - | |
Cme11g01645 | 362 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 1 | 224 | - | - | |
Cme11g01645 | 362 | Pfam | MYB-CC type transfactor, LHEQLE motif | 129 | 168 | IPR025756 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme01g01493 | Cme11g01645 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01468 | Cme-Chr4:20916450 | Cme11g01645 | Cme-Chr11:24315395 | 4.74E-49 | dispersed | |
Cme04g01787 | Cme-Chr4:25571642 | Cme11g01645 | Cme-Chr11:24315395 | 1.20E-55 | dispersed | |
Cme08g01009 | Cme-Chr8:6573492 | Cme11g01645 | Cme-Chr11:24315395 | 3.55E-47 | dispersed | |
Cme08g01857 | Cme-Chr8:22407507 | Cme11g01645 | Cme-Chr11:24315395 | 3.58E-31 | dispersed | |
Cme03g01085 | Cme-Chr3:20251671 | Cme11g01645 | Cme-Chr11:24315395 | 2.61E-12 | transposed | |
Cme04g01679 | Cme-Chr4:24094991 | Cme11g01645 | Cme-Chr11:24315395 | 5.61E-22 | transposed | |
Cme05g00934 | Cme-Chr5:12800456 | Cme11g01645 | Cme-Chr11:24315395 | 8.15E-33 | transposed | |
Cme06g00381 | Cme-Chr6:2389842 | Cme11g01645 | Cme-Chr11:24315395 | 1.04E-18 | transposed | |
Cme01g01493 | Cme-Chr1:19617312 | Cme11g01645 | Cme-Chr11:24315395 | 1.62E-120 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42211 | PF00249 | Myb_DNA-binding | 2.00E-06 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01645 | - | - | csv:101203721 | 665.996 |