Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01645 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCAAATGTGTGTTCAAGGCGATTCCGGTCTCGTCCTCACCACCGACCCCAAACCCCGTCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCTGTCACTCAACTTGGAGGCCCTGATAAAGCTACCCCTAAGACCATCATGCGGGTTATGGGTGTCAAGGGTCTCACTCTCTACCATCTCAAAAGTCATCTTCAGAAGTTCAGACTTGGAAAGCAACCTCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAGAGAAACAGTGGATCTTCTTCCACCTTAATGGACCGTAGCATGAACGAAATGCATATGGAGGTCCAGAGACGACTGCATGAACAAATAGAGGTACAAAGACACCTTCAATTGAGAATCGAGGCTCAAGGCAAATACATGCAAAGCATATTGGAGAAAGCTTGCCAAACCCTCGCCGGTGAGAATATGGCGGCCGCCACCGCCGGTCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAGCCTTGTCTCAGACGCCGCCATCAAAGACTTCATTTCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCTGAACCCCCACCACCTCCGCCGCCTCTCATTGACTGCCTCAAAAAGCCCAGCCCCTTCATCTCTGGCGCCGGTAAGACCCCCATTTTCTGGCCAGACGATCTCCGGCTCCAAGACCTAGGAACTCCTTCCGCCACCTTAGCACCTGCACCCCCTCCCATCGGTGGCGCACCCGACTTGGACTCTCTACAGTTGGAAATGTATGAATCCAAACCGCCGCCACCAACGCCGCTACTCGCTGTTGGCAACAACGTCATGAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGACCATCCCCTCCGCGGTCGGGACATTCGGACGAAAGGTTGAATAGTAATAACAATAATAATGGTATGGCTAACAATAACAACCCAACAATGTTACAGCCACAAGGAAGAAATTCTTCATTTGGTTAA 1089 49.77 MFHATKKPSSMTSHDRQMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSTLMDRSMNEMHMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAATAGPFKTTSNNMGTTTSLVSDAAIKDFISPHHTFPPFQDMNNLFNSEPPPPPPPLIDCLKKPSPFISGAGKTPIFWPDDLRLQDLGTPSATLAPAPPPIGGAPDLDSLQLEMYESKPPPPTPLLAVGNNVMNEKKFDMTLKLERPSPPRSGHSDERLNSNNNNNGMANNNNPTMLQPQGRNSSFG 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24315395 24318702 + MELO3C019621.2.1 Cme11g01645 342308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01645 362 MobiDBLite consensus disorder prediction 329 362 - -
Cme11g01645 362 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cme11g01645 362 MobiDBLite consensus disorder prediction 315 362 - -
Cme11g01645 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 224 IPR044848 GO:0003700
Cme11g01645 362 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677
Cme11g01645 362 Gene3D - 32 90 - -
Cme11g01645 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cme11g01645 362 Pfam Myb-like DNA-binding domain 36 84 IPR001005 -
Cme11g01645 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 224 - -
Cme11g01645 362 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g01493 Cme11g01645 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01468 Cme-Chr4:20916450 Cme11g01645 Cme-Chr11:24315395 4.74E-49 dispersed
Cme04g01787 Cme-Chr4:25571642 Cme11g01645 Cme-Chr11:24315395 1.20E-55 dispersed
Cme08g01009 Cme-Chr8:6573492 Cme11g01645 Cme-Chr11:24315395 3.55E-47 dispersed
Cme08g01857 Cme-Chr8:22407507 Cme11g01645 Cme-Chr11:24315395 3.58E-31 dispersed
Cme03g01085 Cme-Chr3:20251671 Cme11g01645 Cme-Chr11:24315395 2.61E-12 transposed
Cme04g01679 Cme-Chr4:24094991 Cme11g01645 Cme-Chr11:24315395 5.61E-22 transposed
Cme05g00934 Cme-Chr5:12800456 Cme11g01645 Cme-Chr11:24315395 8.15E-33 transposed
Cme06g00381 Cme-Chr6:2389842 Cme11g01645 Cme-Chr11:24315395 1.04E-18 transposed
Cme01g01493 Cme-Chr1:19617312 Cme11g01645 Cme-Chr11:24315395 1.62E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42211 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01645 - - csv:101203721 665.996