Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01646 ATGTACTACAATTCAGTCCTCTTCATGTCTTCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTAGAATTACAACAAAATTATTCAAATTTTGAGACACATTCTATTATCATCATTATTATTTCAATGGCTCCTATGACCCTTCCTCCAGGGTTTCGCTTCCACCCGACAGACGAAGAACTTGTTGCTTACTATTTGGATAGGAAGATCAATGGCCGCTCCATCGAGCTTGAGATCATTCCTGAAATCGACCTTTATAAATGCGAACCCTGGGAATTACCCGATAAGTCGTTTCTGCCGAGCAAAGATATGGAGTGGTACTTCTATAGTCCTCGGGATCGGAAGTACCCTAATGGGTCGAGAACGAATCGGGCGACGAAAGGCGGGTATTGGAAGGCCACTGGGAAAGACCGAGTGGTTCAGTCACAGAAGCGAGCAGTTGGGATGAAGAAAACTTTGGTGTATTATAAAGGAAGAGCTCCTCACGGGGTTAGAACTAATTGGGTTATGCACGAATATCGTCTTCTCCATTCTCAACTTGCCACGGCAGCAACCTCGTCTCCTTCGACCAAGGTT 573 44.85 MYYNSVLFMSSSFSLSLSLSLELQQNYSNFETHSIIIIIISMAPMTLPPGFRFHPTDEELVAYYLDRKINGRSIELEIIPEIDLYKCEPWELPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATKGGYWKATGKDRVVQSQKRAVGMKKTLVYYKGRAPHGVRTNWVMHEYRLLHSQLATAATSSPSTKV 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24327479 24328174 - MELO3C019620.2.1 Cme11g01646 342309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01646 191 PANTHER NAC DOMAIN-CONTAINING PROTEIN-RELATED 42 174 - -
Cme11g01646 191 SUPERFAMILY NAC domain 39 179 IPR036093 GO:0003677|GO:0006355
Cme11g01646 191 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 42 174 - -
Cme11g01646 191 Gene3D NAC domain 56 190 IPR036093 GO:0003677|GO:0006355
Cme11g01646 191 ProSiteProfiles NAC domain profile. 47 191 IPR003441 GO:0003677|GO:0006355
Cme11g01646 191 Pfam No apical meristem (NAM) protein 48 174 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01646 Cme-Chr11:24327479 Cme06g02100 Cme-Chr6:26435404 1.81E-58 dispersed
Cme04g00092 Cme-Chr4:743197 Cme11g01646 Cme-Chr11:24327479 1.28E-68 transposed
Cme09g01014 Cme-Chr9:14241244 Cme11g01646 Cme-Chr11:24327479 1.71E-85 transposed
Cme12g02021 Cme-Chr12:25774584 Cme11g01646 Cme-Chr11:24327479 1.19E-81 transposed
Cme11g01646 Cme-Chr11:24327479 Cme03g01231 Cme-Chr3:21912085 8.82E-60 wgd
Cme11g01646 Cme-Chr11:24327479 Cme03g01231 Cme-Chr3:21912085 8.82E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42212 PF02365 NAM 3.20E-40 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01646 - - cmo:103496277 362.459