Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01654 ATGCCCTTAACCTGGTTGAGCAATATGGGTAACCGGGTGAGCTCGTCGGCTAAACGGAGCGACGGCGGTGTAAAGGGTGGAAAAACGGCAGCCGTGGGGAAAGAAGCGTCGGTTCAGAAAAGTGACGGCGGCGGGGGCGGAAGTAGTCGTGGCAAGTCGTTGTGGCGGCCTGGGAAGAAGGTCGATTTTCCGAAGAAATATGGATTCATAGCGGATAACTTCTCCTCTATTGACCAGGTTACCTCAGCATTGAGAAAAGAAGGATTAGAATCGTCGAACCTCATCGTCGGAATTGATTTCACCAAAAGCAACGAATGGACAGGTAAAGTATCGTTCAATAATCGGAGCTTGCACGCCCTTTCCGATTCTCCTAATCCCTACCAGAAGGCTCTCTCCATCATCGGGAAAACTCTGGCTCCCTTCGATGAAGACGGCTTAATTCCTTGCTTCGGTTTCGGTGACGCTACAACGCACGATCAAATGGTGTTCAGTTTTCACAACGACAATTCGCCGTGCCATGGATTTGAAGAAGTTCTTGACTGCTACAAAAACATAATTCCCAATGCTCAACTTTCAGGACCAACTTCTTACGGTCCTGTTGTTGAAGCTGCAATGGATATTGTAGAGAAGAGTGGTGGGCAATTTCATATTCTTCTCATTGTTGCTGACGGACAGGTTACTCGAAGCTCCAGTGTTGGCGATGGTGAATTGAGCGTTCAAGAGGAGAGAACAATCAAAGCAATTGTCGATGCAAGTGCATATCCTCTTTCAATCATTCTTGTTGGAGTTGGAGATGGTCCTTGGGACGACATGAAGAAGTTCGACGACAAGATTCCAGCTCGGGATTTCGATAATTTCCAGTTTGTTAACTTCACTGAAATAATGTCGAAAAACATTGGCGTGCCGGAAAAAGAAGCAGCTTTTGCTTTAGCTGCATTAATGGAGGTTCCTTTCCAGTACAAAGCAGTCACAGAAATGGGTCTTATAGGACATGTGACAGTGAAAGCAAAACATATCGTGCCACGACCCCCACCGACACGTTATACTCGTCCTACACGACTTACTTCTGTACCAAGCAACACCTCCTCAACTTCTGCATCTGATGAACATAGTCAGGTCTGCCCCATTTGCTTGACCGCGGGAAAGGACTTGGCCTTCGGATGCGGCCACATGACTTGTAGGGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGCCAGCCTATCAGAAACCGAATAAGGCTGTATACTGGGTGA 1260 47.14 MPLTWLSNMGNRVSSSAKRSDGGVKGGKTAAVGKEASVQKSDGGGGGSSRGKSLWRPGKKVDFPKKYGFIADNFSSIDQVTSALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNRSLHALSDSPNPYQKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQMVFSFHNDNSPCHGFEEVLDCYKNIIPNAQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSSVGDGELSVQEERTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSKNIGVPEKEAAFALAALMEVPFQYKAVTEMGLIGHVTVKAKHIVPRPPPTRYTRPTRLTSVPSNTSSTSASDEHSQVCPICLTAGKDLAFGCGHMTCRECGSRLSNCHICRQPIRNRIRLYTG 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24374234 24383529 - MELO3C019616.2.1 Cme11g01654 342317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01654 419 MobiDBLite consensus disorder prediction 1 57 - -
Cme11g01654 419 Pfam Zinc finger, C3HC4 type (RING finger) 372 411 - -
Cme11g01654 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 52 418 - -
Cme11g01654 419 Pfam Copine 116 329 IPR010734 -
Cme11g01654 419 SUPERFAMILY vWA-like 93 274 IPR036465 -
Cme11g01654 419 ProSiteProfiles Zinc finger RING-type profile. 374 407 IPR001841 -
Cme11g01654 419 PANTHER COPINE FAMILY PROTEIN 1 52 418 - -
Cme11g01654 419 MobiDBLite consensus disorder prediction 1 18 - -
Cme11g01654 419 CDD RING-HC_RGLG_plant 373 417 IPR045317 GO:0061630|GO:0070534
Cme11g01654 419 SUPERFAMILY RING/U-box 370 414 - -
Cme11g01654 419 SMART VWA_4 91 294 IPR002035 -
Cme11g01654 419 MobiDBLite consensus disorder prediction 340 368 - -
Cme11g01654 419 MobiDBLite consensus disorder prediction 349 368 - -
Cme11g01654 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 355 418 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01218 Cme-Chr5:19712232 Cme11g01654 Cme-Chr11:24374234 2.00E-21 dispersed
Cme08g01137 Cme-Chr8:8000441 Cme11g01654 Cme-Chr11:24374234 2.58E-154 dispersed
Cme09g00441 Cme-Chr9:4220702 Cme11g01654 Cme-Chr11:24374234 5.42E-149 dispersed
Cme10g00600 Cme-Chr10:3825102 Cme11g01654 Cme-Chr11:24374234 9.42E-160 dispersed
Cme11g01654 Cme-Chr11:24374234 Cme04g01825 Cme-Chr4:26000523 2.75E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01654 K16280 - csv:101218058 759.214