Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01654 ATGCCCTTAACCTGGTTGAGCAATATGGGTAACCGGGTGAGCTCGTCGGCTAAACGGAGCGACGGCGGTGTAAAGGGTGGAAAAACGGCAGCCGTGGGGAAAGAAGCGTCGGTTCAGAAAAGTGACGGCGGCGGGGGCGGAAGTAGTCGTGGCAAGTCGTTGTGGCGGCCTGGGAAGAAGGTCGATTTTCCGAAGAAATATGGATTCATAGCGGATAACTTCTCCTCTATTGACCAGGTTACCTCAGCATTGAGAAAAGAAGGATTAGAATCGTCGAACCTCATCGTCGGAATTGATTTCACCAAAAGCAACGAATGGACAGGTAAAGTATCGTTCAATAATCGGAGCTTGCACGCCCTTTCCGATTCTCCTAATCCCTACCAGAAGGCTCTCTCCATCATCGGGAAAACTCTGGCTCCCTTCGATGAAGACGGCTTAATTCCTTGCTTCGGTTTCGGTGACGCTACAACGCACGATCAAATGGTGTTCAGTTTTCACAACGACAATTCGCCGTGCCATGGATTTGAAGAAGTTCTTGACTGCTACAAAAACATAATTCCCAATGCTCAACTTTCAGGACCAACTTCTTACGGTCCTGTTGTTGAAGCTGCAATGGATATTGTAGAGAAGAGTGGTGGGCAATTTCATATTCTTCTCATTGTTGCTGACGGACAGGTTACTCGAAGCTCCAGTGTTGGCGATGGTGAATTGAGCGTTCAAGAGGAGAGAACAATCAAAGCAATTGTCGATGCAAGTGCATATCCTCTTTCAATCATTCTTGTTGGAGTTGGAGATGGTCCTTGGGACGACATGAAGAAGTTCGACGACAAGATTCCAGCTCGGGATTTCGATAATTTCCAGTTTGTTAACTTCACTGAAATAATGTCGAAAAACATTGGCGTGCCGGAAAAAGAAGCAGCTTTTGCTTTAGCTGCATTAATGGAGGTTCCTTTCCAGTACAAAGCAGTCACAGAAATGGGTCTTATAGGACATGTGACAGTGAAAGCAAAACATATCGTGCCACGACCCCCACCGACACGTTATACTCGTCCTACACGACTTACTTCTGTACCAAGCAACACCTCCTCAACTTCTGCATCTGATGAACATAGTCAGGTCTGCCCCATTTGCTTGACCGCGGGAAAGGACTTGGCCTTCGGATGCGGCCACATGACTTGTAGGGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGCCAGCCTATCAGAAACCGAATAAGGCTGTATACTGGGTGA 1260 47.14 MPLTWLSNMGNRVSSSAKRSDGGVKGGKTAAVGKEASVQKSDGGGGGSSRGKSLWRPGKKVDFPKKYGFIADNFSSIDQVTSALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNRSLHALSDSPNPYQKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQMVFSFHNDNSPCHGFEEVLDCYKNIIPNAQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSSVGDGELSVQEERTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFDNFQFVNFTEIMSKNIGVPEKEAAFALAALMEVPFQYKAVTEMGLIGHVTVKAKHIVPRPPPTRYTRPTRLTSVPSNTSSTSASDEHSQVCPICLTAGKDLAFGCGHMTCRECGSRLSNCHICRQPIRNRIRLYTG 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24374234 24383529 - MELO3C019616.2.1 Cme11g01654 342317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01654 419 MobiDBLite consensus disorder prediction 1 57 - -
Cme11g01654 419 Pfam Zinc finger, C3HC4 type (RING finger) 372 411 - -
Cme11g01654 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 52 418 - -
Cme11g01654 419 Pfam Copine 116 329 IPR010734 -
Cme11g01654 419 SUPERFAMILY vWA-like 93 274 IPR036465 -
Cme11g01654 419 ProSiteProfiles Zinc finger RING-type profile. 374 407 IPR001841 -
Cme11g01654 419 PANTHER COPINE FAMILY PROTEIN 1 52 418 - -
Cme11g01654 419 MobiDBLite consensus disorder prediction 1 18 - -
Cme11g01654 419 CDD RING-HC_RGLG_plant 373 417 IPR045317 GO:0061630|GO:0070534
Cme11g01654 419 SUPERFAMILY RING/U-box 370 414 - -
Cme11g01654 419 SMART VWA_4 91 294 IPR002035 -
Cme11g01654 419 MobiDBLite consensus disorder prediction 340 368 - -
Cme11g01654 419 MobiDBLite consensus disorder prediction 349 368 - -
Cme11g01654 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 355 418 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01654 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101218058 759.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01218 Cme-Chr5:19712232 Cme11g01654 Cme-Chr11:24374234 2.00E-21 dispersed
Cme08g01137 Cme-Chr8:8000441 Cme11g01654 Cme-Chr11:24374234 2.58E-154 dispersed
Cme09g00441 Cme-Chr9:4220702 Cme11g01654 Cme-Chr11:24374234 5.42E-149 dispersed
Cme10g00600 Cme-Chr10:3825102 Cme11g01654 Cme-Chr11:24374234 9.42E-160 dispersed
Cme11g01654 Cme-Chr11:24374234 Cme04g01825 Cme-Chr4:26000523 2.75E-150 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1179 . . . . Bpe07g00480 . . . . . . . . . . . . . . . . . . . Cla02g01840 Cam02g1946 Cec02g1973 Cco02g2012 . . Cre02g2188 . . . . . . . Cme11g01654 . . . . . . . . Sed05g3319 . . . . . . . Cpe05g01024 Bhi10g00922 Tan05g0573 Cmetu11g1928 . Hepe08g0658 . . . . . . . . . . Csa06g01141 Chy11g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002870 1 4 2 0 1 1 1 2 2 2 1 1 3 2 2 3 1 3 3 2 2 2 1 2 2 2 2 2 2 1 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01654 Cme_Chr11 FPKM 6.05702 6.178711 6.498753 8.425108 0.0 0.0 0.0 0.0 0.072913 0.0