Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01655 ATGAAGAAGAAGAAGAAGAAGAAGAGAGAGAGAAAGAAGAAGAGGAATTTCACAAAAATTGAGAGCGGAGAGAAGAAAGAAAACGAAAGGAAACGAAAGGATCGTCCAAAACTAAACCCCAAACGTCAAACCCAAACCAATTTTCGCGCTCTAATTCTCTCTCAACTTCAATCTCTCCATTTCTATGATATAAGTATGACCCAATCGCCGGTGCCTCCGTCCTTGGCTCCGCCGCACCCACCGCCATTATACGGCTCCGGAGTTCAGGTCCGTTGCGCTGGTTGTCGTGATGTTTTGGTAGTGGCGCCTGGTCATACTGAGTTCTTCTGTCCATCTTGTCAATTGCCTCAGATGTTGCCTCCTGAGCTTCTAGTTAGGGCCCACTCCAAGCCCCTTCCTCATCCTTCTCCTCCTCTACCGCCGCCTCCGCCTCCGCCGCCGTCGCTACCTCTTCCCCTTCCTTTGTCCATACACCATGTTCCTGCTCATGGCATTGATCCTACCAAGATGCAGCTTCCTTGCGCTAATTGCAAAGCGCTTCTTAATGTTCCTCATGGTTTAACTAGGTTCGTTTGTCCTCAGTGTGCGGTTGACCTCGCTGTTGATGTTTCCAAGCTTCATCAGTTCTTTCCCTCCCGGCCGCCTCCTGAAGAAGTCAACGAGATAATGTTGACTGGAATAGAGTTGGTTGGGACCGCTGACAATGACAAATGCAATTGTATTTCTTTAGTAACTACCAAGGAATTGAAAAGAGGTGAAAATATGTTTCCCAAGGATTTTTTGTGGGAGATTGTGGAGGAAGGCAAAAGAGCTCACTTGGTGAATTGGGCATTGGTAAAAACCTATTCACTAGGGAGGGTTGGAATTAGGGGGAGGCAGGTTTTATATGGAAGGTTGGGGACTGTGCTTTGTTGTATGATTGGAGACCCTTTCTCCAGGGTGCTTCCTCTTGTGGGATTGGTAGCCATTGAAGTGGAAAGAGAAGAAGATGAAGGTGGTACAGTGGGAGAGACATTTACTGAATATCACCCTCCCAAGCTATCTATAGGACCACCTCACCCAGACCCAGTTGTGGAGACATCATCCTTATCTGCCGTCCAGCCTCCTGAACCCACTTATGATTTAAAAATCAAGGATGATTTAGAAAAGTCAAAAGCTCTTTCATGCTTGCAAATTGAGACCTTGGTATATGCCTCTCAGAGACATATGCACCATCTCCCCAATGATACCAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGAACCATTGCAGGTTTATTATGGGAAAATTGGCACCATGGGAGGAGGAAATCATTGTGGATTTCGGTTGGTTCAGATTTGAAGTACGATGCTAGGAGAGACTTAGATGATGTAGGTGCAGCGTGCATTAAAGTGCATGCTTTGAACAAGCTGCCTTATTCAAAGCTTGACTCGAAATCTGTGGGTATTAGAGAAGGAGTTATCTTTTTGACGTATAGCAGCCTCATAGCATCTTCTGAACGAGGCCGTTCTCGCCTACAGCAGCTCGTTCAGTGGTGTGGAACAGGATATGATGGTCTCATCATATTTGATGAGTGTCATAAAGCAAAAAATTTGGTACCAGAAGCTGGAAGCCAGCCAACTAGGACAGGAGAAGCCGTTCTAGAGCTGCAGGATCGACTTCCTGAAGCTCGTATAATTTACTGCTCAGCCACAGGTGCATCTGAGCCACGGAATATGGGCTATATGGTCCGCCTCGGGCTTTGGGGAACTGGAACTTCCTTTATTGACTTCCGTGATTTTTTAGGTGCGTTGGAGAGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCGATGGACATGAAAGCAAGGGGTATGTATTTGTGTCGCACACTTAGCTACCGAGGAGCTGAATTTGACATTGTGGAAGCACCGTTGGAAGCTGAGATGATGGAAATGTATACATTAGCTGCTGAATTTTGGGCAAAGTTGCGATTAGAATTGATGACAGCAAGTGCGTATGTTACTAGTGACAAGCCTAGCACCAATCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATATGTGTATGTCTGCCAAGGTTCCTGCTACTGTTAGACTAGCTAAGCAAGCCTTATCAGAAGATAAATGTGTTGTCATTGGCCTGCAAAGTACTGGAGAGGCACGCACTGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGATTAAATTTGTGGAAGAAAATTACCCTTTACCCGAAAAGCCTGAAACCCTACCTGAGGAGGGAAGTGTGAAGGAGCTTCAAAGGAAGAGACACTTGGCAACTCCTGGCATGTCACTAAATGGGCGGTTAAGGAAAGCTGCAAAGTGGAAACCTCCAAGTGATGTTGAAAGTGATGAAGAATCTGAAACTGATTCTGCTCCTGAATCTACCGAATCAGATGATGAGTTTCAGATTTGTGAGATTTGCAATACTGAAGGGGAAAGGAAAAAATTACTTCGATGTTCCTGTTGTGAGCAACTTTTTCACCCTGCCTGTCTCGACCCACCTCCCTTGGACACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAAGAAAAGACAGATGAGTATCTTAAAGAAAGAAAAGCTGTTGTAGCTGAACTTTTGAAAAGGTATAATGCTGCTTCTGATCGTAAGTCTAATTTGCTAGCAATTATCCGTTCATTGAATCTTCCAAACAATCCTTTGGATGATATTATTGATCAGCTTGGTGGTCCTGATAAGGTTGCGGAAATTACTGGAAGAAGGGGAATGCTTGTAAGGGCCCCCAATGGGAAGGGTGTTACTTACCAGCCACGGAATTCGAAGGATGTGACTATGGAGATGGTCAATATGCATGAGAAACAAATGTTTATGGATGGTAAGAAGTTTGTTGCCATCATTTCTGAAGCTGGATCAGCTGGTGTTTCACTGCAGGCAGATAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCTGATCGAGCCATTCAACAATTTGGACGAACTCATCGCTCTAATCAAACTTCAGCACCCGAATACAGGCTGCTTTTTACGAATCTTGGTGGAGAACGGAGGTTTGCATCAATTGTTGCCAAGAGATTAGAATCACTTGGGGCCTTAACTCAAGGAGATCGAAGGGCTGGGTTGTCATTAAGTGCATATAATTATGACAGTGCTTATGGGAAAACCGCCTTGACGATGATGTATAGAGGAATAATGGAGCAGGATGCCTTGCCCGTTGAACCTCCTGGTTGCTCATCTGAGAAACCTGAGACAATTCGTGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATCAGGGACACCGTACTTGCAACTGGGAAGGACTTCGGAAAGAGCTCTGGTCGTATTGTTGAGTCAGACATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTCCCACCTGACATTCAGAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTTCTAATTCAAAAAGCACGCATTGAAGGGAATCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTGTTGAATTACGAGGAAGTCCAAAGACAGTTCACGTTGATCCTGTCTCTGGGGCATCGACCATGCTGTTCACTTTCTCTTTGGATCGTGGCGTGACCTGGGAGTCTGCGAGCACCATTCTTGATGAGAAGCAAAAGGATGGGCTTGGTTCAACCAATGATGGGTTTTATGAATCCAGGAGGGACTGGTTGGGAAGATGCCACATCATATTAGCCTTTGAAAGTTCTGTTTCTGGGATGTATAAAATTGTTCGGCCAGCTATTGGGGAGTCATTGAGGGAAATGTCTCTCTCCGAGTTACGAAACAAATATCGGAAAACATCATCTTTAGAGAAGGCTCGTAATGGGTGGGAAGATGAGTATGATATTTCCTCAAAACAGTGCATGCATGGACCGAAGTGTAAGCTTGGCAACTTCTGTACGGTTGGCAGGAGAATACAGGAAGTCAATGTTTTAGGTGGCCTTATTCTTCCTGTTTGGGGAACTATTGAAAATGCTCTTTCTAAGCAGGCCCGCCAAAGTCACCAGCGGCTTCGTGTAGTACGTATAGAAACTACAACAGATAAACAGAGAATAGTTGGACTGTTTGTACCAAATGCAGCAGTTGAATCAGTGCTTCAAGGTTTGGCATGGGTACAAGATGTAGATGATTGA 4296 44.67 MKKKKKKKRERKKKRNFTKIESGEKKENERKRKDRPKLNPKRQTQTNFRALILSQLQSLHFYDISMTQSPVPPSLAPPHPPPLYGSGVQVRCAGCRDVLVVAPGHTEFFCPSCQLPQMLPPELLVRAHSKPLPHPSPPLPPPPPPPPSLPLPLPLSIHHVPAHGIDPTKMQLPCANCKALLNVPHGLTRFVCPQCAVDLAVDVSKLHQFFPSRPPPEEVNEIMLTGIELVGTADNDKCNCISLVTTKELKRGENMFPKDFLWEIVEEGKRAHLVNWALVKTYSLGRVGIRGRQVLYGRLGTVLCCMIGDPFSRVLPLVGLVAIEVEREEDEGGTVGETFTEYHPPKLSIGPPHPDPVVETSSLSAVQPPEPTYDLKIKDDLEKSKALSCLQIETLVYASQRHMHHLPNDTRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRKSLWISVGSDLKYDARRDLDDVGAACIKVHALNKLPYSKLDSKSVGIREGVIFLTYSSLIASSERGRSRLQQLVQWCGTGYDGLIIFDECHKAKNLVPEAGSQPTRTGEAVLELQDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFDIVEAPLEAEMMEMYTLAAEFWAKLRLELMTASAYVTSDKPSTNQLWRLFWASHQRFFRHMCMSAKVPATVRLAKQALSEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLIKFVEENYPLPEKPETLPEEGSVKELQRKRHLATPGMSLNGRLRKAAKWKPPSDVESDEESETDSAPESTESDDEFQICEICNTEGERKKLLRCSCCEQLFHPACLDPPPLDTETAEWSCQSCKEKTDEYLKERKAVVAELLKRYNAASDRKSNLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRAPNGKGVTYQPRNSKDVTMEMVNMHEKQMFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQTSAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGLSLSAYNYDSAYGKTALTMMYRGIMEQDALPVEPPGCSSEKPETIRDFIENAKAALNSVGIIRDTVLATGKDFGKSSGRIVESDMNDIGRFLNRLLGLPPDIQNRIFELFVSILDLLIQKARIEGNLDSGIVDMRANVVELRGSPKTVHVDPVSGASTMLFTFSLDRGVTWESASTILDEKQKDGLGSTNDGFYESRRDWLGRCHIILAFESSVSGMYKIVRPAIGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLQGLAWVQDVDD 1431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24394751 24426957 + MELO3C019615.2.1 Cme11g01655 342318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01655 1431 ProSiteProfiles Zinc finger PHD-type profile. 830 880 IPR019787 -
Cme11g01655 1431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 891 IPR013083 -
Cme11g01655 1431 Pfam PHD-finger 832 880 IPR019787 -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 1 15 - -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 127 150 - -
Cme11g01655 1431 Pfam P-loop containing NTP hydrolase pore-1 352 651 IPR039187 -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 788 826 - -
Cme11g01655 1431 PANTHER STRAWBERRY NOTCH-RELATED 87 1431 IPR026741 GO:0006355
Cme11g01655 1431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 595 IPR027417 -
Cme11g01655 1431 PANTHER OS08G0223700 PROTEIN 87 1431 - -
Cme11g01655 1431 ProSitePatterns Zinc finger PHD-type signature. 833 877 IPR019786 -
Cme11g01655 1431 SUPERFAMILY FYVE/PHD zinc finger 822 883 IPR011011 -
Cme11g01655 1431 Gene3D - 382 582 IPR027417 -
Cme11g01655 1431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1076 IPR027417 -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 131 150 - -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 1 46 - -
Cme11g01655 1431 SMART PHD_3 832 878 IPR001965 -
Cme11g01655 1431 Pfam C-terminal domain on Strawberry notch homologue 921 1210 IPR026937 -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 16 34 - -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 811 826 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01655 Cme-Chr11:24394751 Cme12g00648 Cme-Chr12:11948764 7.18E-39 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42213 PF13872 AAA_34 1.80E-131 CL0023 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01655 - - csv:101218295 2161.34