Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01655 ATGAAGAAGAAGAAGAAGAAGAAGAGAGAGAGAAAGAAGAAGAGGAATTTCACAAAAATTGAGAGCGGAGAGAAGAAAGAAAACGAAAGGAAACGAAAGGATCGTCCAAAACTAAACCCCAAACGTCAAACCCAAACCAATTTTCGCGCTCTAATTCTCTCTCAACTTCAATCTCTCCATTTCTATGATATAAGTATGACCCAATCGCCGGTGCCTCCGTCCTTGGCTCCGCCGCACCCACCGCCATTATACGGCTCCGGAGTTCAGGTCCGTTGCGCTGGTTGTCGTGATGTTTTGGTAGTGGCGCCTGGTCATACTGAGTTCTTCTGTCCATCTTGTCAATTGCCTCAGATGTTGCCTCCTGAGCTTCTAGTTAGGGCCCACTCCAAGCCCCTTCCTCATCCTTCTCCTCCTCTACCGCCGCCTCCGCCTCCGCCGCCGTCGCTACCTCTTCCCCTTCCTTTGTCCATACACCATGTTCCTGCTCATGGCATTGATCCTACCAAGATGCAGCTTCCTTGCGCTAATTGCAAAGCGCTTCTTAATGTTCCTCATGGTTTAACTAGGTTCGTTTGTCCTCAGTGTGCGGTTGACCTCGCTGTTGATGTTTCCAAGCTTCATCAGTTCTTTCCCTCCCGGCCGCCTCCTGAAGAAGTCAACGAGATAATGTTGACTGGAATAGAGTTGGTTGGGACCGCTGACAATGACAAATGCAATTGTATTTCTTTAGTAACTACCAAGGAATTGAAAAGAGGTGAAAATATGTTTCCCAAGGATTTTTTGTGGGAGATTGTGGAGGAAGGCAAAAGAGCTCACTTGGTGAATTGGGCATTGGTAAAAACCTATTCACTAGGGAGGGTTGGAATTAGGGGGAGGCAGGTTTTATATGGAAGGTTGGGGACTGTGCTTTGTTGTATGATTGGAGACCCTTTCTCCAGGGTGCTTCCTCTTGTGGGATTGGTAGCCATTGAAGTGGAAAGAGAAGAAGATGAAGGTGGTACAGTGGGAGAGACATTTACTGAATATCACCCTCCCAAGCTATCTATAGGACCACCTCACCCAGACCCAGTTGTGGAGACATCATCCTTATCTGCCGTCCAGCCTCCTGAACCCACTTATGATTTAAAAATCAAGGATGATTTAGAAAAGTCAAAAGCTCTTTCATGCTTGCAAATTGAGACCTTGGTATATGCCTCTCAGAGACATATGCACCATCTCCCCAATGATACCAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGAACCATTGCAGGTTTATTATGGGAAAATTGGCACCATGGGAGGAGGAAATCATTGTGGATTTCGGTTGGTTCAGATTTGAAGTACGATGCTAGGAGAGACTTAGATGATGTAGGTGCAGCGTGCATTAAAGTGCATGCTTTGAACAAGCTGCCTTATTCAAAGCTTGACTCGAAATCTGTGGGTATTAGAGAAGGAGTTATCTTTTTGACGTATAGCAGCCTCATAGCATCTTCTGAACGAGGCCGTTCTCGCCTACAGCAGCTCGTTCAGTGGTGTGGAACAGGATATGATGGTCTCATCATATTTGATGAGTGTCATAAAGCAAAAAATTTGGTACCAGAAGCTGGAAGCCAGCCAACTAGGACAGGAGAAGCCGTTCTAGAGCTGCAGGATCGACTTCCTGAAGCTCGTATAATTTACTGCTCAGCCACAGGTGCATCTGAGCCACGGAATATGGGCTATATGGTCCGCCTCGGGCTTTGGGGAACTGGAACTTCCTTTATTGACTTCCGTGATTTTTTAGGTGCGTTGGAGAGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCGATGGACATGAAAGCAAGGGGTATGTATTTGTGTCGCACACTTAGCTACCGAGGAGCTGAATTTGACATTGTGGAAGCACCGTTGGAAGCTGAGATGATGGAAATGTATACATTAGCTGCTGAATTTTGGGCAAAGTTGCGATTAGAATTGATGACAGCAAGTGCGTATGTTACTAGTGACAAGCCTAGCACCAATCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCATATGTGTATGTCTGCCAAGGTTCCTGCTACTGTTAGACTAGCTAAGCAAGCCTTATCAGAAGATAAATGTGTTGTCATTGGCCTGCAAAGTACTGGAGAGGCACGCACTGAGGAAGCTGTGACAAAATATGGCCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGATTAAATTTGTGGAAGAAAATTACCCTTTACCCGAAAAGCCTGAAACCCTACCTGAGGAGGGAAGTGTGAAGGAGCTTCAAAGGAAGAGACACTTGGCAACTCCTGGCATGTCACTAAATGGGCGGTTAAGGAAAGCTGCAAAGTGGAAACCTCCAAGTGATGTTGAAAGTGATGAAGAATCTGAAACTGATTCTGCTCCTGAATCTACCGAATCAGATGATGAGTTTCAGATTTGTGAGATTTGCAATACTGAAGGGGAAAGGAAAAAATTACTTCGATGTTCCTGTTGTGAGCAACTTTTTCACCCTGCCTGTCTCGACCCACCTCCCTTGGACACAGAAACTGCAGAATGGTCATGTCAGTCTTGCAAAGAAAAGACAGATGAGTATCTTAAAGAAAGAAAAGCTGTTGTAGCTGAACTTTTGAAAAGGTATAATGCTGCTTCTGATCGTAAGTCTAATTTGCTAGCAATTATCCGTTCATTGAATCTTCCAAACAATCCTTTGGATGATATTATTGATCAGCTTGGTGGTCCTGATAAGGTTGCGGAAATTACTGGAAGAAGGGGAATGCTTGTAAGGGCCCCCAATGGGAAGGGTGTTACTTACCAGCCACGGAATTCGAAGGATGTGACTATGGAGATGGTCAATATGCATGAGAAACAAATGTTTATGGATGGTAAGAAGTTTGTTGCCATCATTTCTGAAGCTGGATCAGCTGGTGTTTCACTGCAGGCAGATAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCTGATCGAGCCATTCAACAATTTGGACGAACTCATCGCTCTAATCAAACTTCAGCACCCGAATACAGGCTGCTTTTTACGAATCTTGGTGGAGAACGGAGGTTTGCATCAATTGTTGCCAAGAGATTAGAATCACTTGGGGCCTTAACTCAAGGAGATCGAAGGGCTGGGTTGTCATTAAGTGCATATAATTATGACAGTGCTTATGGGAAAACCGCCTTGACGATGATGTATAGAGGAATAATGGAGCAGGATGCCTTGCCCGTTGAACCTCCTGGTTGCTCATCTGAGAAACCTGAGACAATTCGTGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATCAGGGACACCGTACTTGCAACTGGGAAGGACTTCGGAAAGAGCTCTGGTCGTATTGTTGAGTCAGACATGAATGATATTGGACGTTTTCTTAATCGGCTTTTGGGCCTCCCACCTGACATTCAGAATAGGATTTTTGAGTTATTTGTCAGCATATTGGATCTTCTAATTCAAAAAGCACGCATTGAAGGGAATCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTGTTGAATTACGAGGAAGTCCAAAGACAGTTCACGTTGATCCTGTCTCTGGGGCATCGACCATGCTGTTCACTTTCTCTTTGGATCGTGGCGTGACCTGGGAGTCTGCGAGCACCATTCTTGATGAGAAGCAAAAGGATGGGCTTGGTTCAACCAATGATGGGTTTTATGAATCCAGGAGGGACTGGTTGGGAAGATGCCACATCATATTAGCCTTTGAAAGTTCTGTTTCTGGGATGTATAAAATTGTTCGGCCAGCTATTGGGGAGTCATTGAGGGAAATGTCTCTCTCCGAGTTACGAAACAAATATCGGAAAACATCATCTTTAGAGAAGGCTCGTAATGGGTGGGAAGATGAGTATGATATTTCCTCAAAACAGTGCATGCATGGACCGAAGTGTAAGCTTGGCAACTTCTGTACGGTTGGCAGGAGAATACAGGAAGTCAATGTTTTAGGTGGCCTTATTCTTCCTGTTTGGGGAACTATTGAAAATGCTCTTTCTAAGCAGGCCCGCCAAAGTCACCAGCGGCTTCGTGTAGTACGTATAGAAACTACAACAGATAAACAGAGAATAGTTGGACTGTTTGTACCAAATGCAGCAGTTGAATCAGTGCTTCAAGGTTTGGCATGGGTACAAGATGTAGATGATTGA 4296 44.67 MKKKKKKKRERKKKRNFTKIESGEKKENERKRKDRPKLNPKRQTQTNFRALILSQLQSLHFYDISMTQSPVPPSLAPPHPPPLYGSGVQVRCAGCRDVLVVAPGHTEFFCPSCQLPQMLPPELLVRAHSKPLPHPSPPLPPPPPPPPSLPLPLPLSIHHVPAHGIDPTKMQLPCANCKALLNVPHGLTRFVCPQCAVDLAVDVSKLHQFFPSRPPPEEVNEIMLTGIELVGTADNDKCNCISLVTTKELKRGENMFPKDFLWEIVEEGKRAHLVNWALVKTYSLGRVGIRGRQVLYGRLGTVLCCMIGDPFSRVLPLVGLVAIEVEREEDEGGTVGETFTEYHPPKLSIGPPHPDPVVETSSLSAVQPPEPTYDLKIKDDLEKSKALSCLQIETLVYASQRHMHHLPNDTRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRKSLWISVGSDLKYDARRDLDDVGAACIKVHALNKLPYSKLDSKSVGIREGVIFLTYSSLIASSERGRSRLQQLVQWCGTGYDGLIIFDECHKAKNLVPEAGSQPTRTGEAVLELQDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFDIVEAPLEAEMMEMYTLAAEFWAKLRLELMTASAYVTSDKPSTNQLWRLFWASHQRFFRHMCMSAKVPATVRLAKQALSEDKCVVIGLQSTGEARTEEAVTKYGLELDDFVSGPRELLIKFVEENYPLPEKPETLPEEGSVKELQRKRHLATPGMSLNGRLRKAAKWKPPSDVESDEESETDSAPESTESDDEFQICEICNTEGERKKLLRCSCCEQLFHPACLDPPPLDTETAEWSCQSCKEKTDEYLKERKAVVAELLKRYNAASDRKSNLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRAPNGKGVTYQPRNSKDVTMEMVNMHEKQMFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQTSAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGLSLSAYNYDSAYGKTALTMMYRGIMEQDALPVEPPGCSSEKPETIRDFIENAKAALNSVGIIRDTVLATGKDFGKSSGRIVESDMNDIGRFLNRLLGLPPDIQNRIFELFVSILDLLIQKARIEGNLDSGIVDMRANVVELRGSPKTVHVDPVSGASTMLFTFSLDRGVTWESASTILDEKQKDGLGSTNDGFYESRRDWLGRCHIILAFESSVSGMYKIVRPAIGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPKCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLRVVRIETTTDKQRIVGLFVPNAAVESVLQGLAWVQDVDD 1431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24394751 24426957 + MELO3C019615.2.1 Cme11g01655 342318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01655 1431 ProSiteProfiles Zinc finger PHD-type profile. 830 880 IPR019787 -
Cme11g01655 1431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 891 IPR013083 -
Cme11g01655 1431 Pfam PHD-finger 832 880 IPR019787 -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 1 15 - -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 127 150 - -
Cme11g01655 1431 Pfam P-loop containing NTP hydrolase pore-1 352 651 IPR039187 -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 788 826 - -
Cme11g01655 1431 PANTHER STRAWBERRY NOTCH-RELATED 87 1431 IPR026741 GO:0006355
Cme11g01655 1431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 595 IPR027417 -
Cme11g01655 1431 PANTHER OS08G0223700 PROTEIN 87 1431 - -
Cme11g01655 1431 ProSitePatterns Zinc finger PHD-type signature. 833 877 IPR019786 -
Cme11g01655 1431 SUPERFAMILY FYVE/PHD zinc finger 822 883 IPR011011 -
Cme11g01655 1431 Gene3D - 382 582 IPR027417 -
Cme11g01655 1431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1076 IPR027417 -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 131 150 - -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 1 46 - -
Cme11g01655 1431 SMART PHD_3 832 878 IPR001965 -
Cme11g01655 1431 Pfam C-terminal domain on Strawberry notch homologue 921 1210 IPR026937 -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 16 34 - -
Cme11g01655 1431 MobiDBLite consensus disorder prediction 811 826 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01655 - - - csv:101218295 2161.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01655 Cme-Chr11:24394751 Cme12g00648 Cme-Chr12:11948764 7.18E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1181 . . . . Bpe07g00481 . . . . . . . . . . . . . . . . . . . Cla02g01841 Cam02g1947 Cec02g1974 Cco02g2013 Clacu02g1928 Cmu02g1877 Cre02g2189 . . . . . . . Cme11g01655 . . . . . . . Bma12g00561 . . . . . . . . Cpe05g01023 Bhi10g00921 . . . . . . . . . . . . . . Csa06g01139 Chy11g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008454 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42213 PF13872 AAA_34 1.80E-131 CL0023 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01655 Cme_Chr11 FPKM 0.880096 0.707214 4.002875 3.963622 0.0 1.406909 0.515829 6.311423 6.620553 6.392726