Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01660 ATGTTAGGTTACAGGAAGCCAATGTCGCCTATTTCAAATTTTTGTTTCTTCTTCCTCCTCCTCTTCTTCTTATCCTTCTCCTCCTCCTTCCTCTTTGCATTGGGCGACGAAGCCAACAACTACAACAACAATGACGACGAAGACGAACAACAAACAATCAGATTTGATCTACTTCACCGTCACCATCCACAAGTCTCCGAAAAGCTTAACGGTGATATGAAAATCCAAGATCTTCATGAAAGAATGAAAGACATTCATGAACACGACCGCAATCGTCACCGCTCCATCTCCAAATCCATGAACCAGAAGCAAATTGAGGATGCGAGGTTGAGGGCAGAGGCAGAGGCGGCGACACAGGTAGAGGTGGCAAAGAGTGCAATACTTCCACCGGCAACGTCGACGCCGATAGGAATGAAAATGATTTCGGGTGCAGATTTTGGGAGTAGTGAGTATTTCGTACAATTGAAGGTGGGAACACCGGCGCAAACGTTTATGTTGATTGCGGATACAGGGAGCGATTTAACGTGGTTGAAATGTAGATATCGAAGGTGTTTTGGGAATTGTAGCGGTAACGTGAATCATAAAAGCAAAAATGAAAAGAAACAGAGATTTAGACATGCGTTATTGGCGAATCAGTCGTCTACTTTTAAGACAGTTTCTTGCAGCTCAACGATGTGTACAAATAATCTTGCGGAATTGTTTGCTGTTGCGGAATGCGACACCCCAACTAGTCCTTGTGTCTATGATTACAGCTACGCAGGAGGTGCAAGTGCAAAGGGAATATTCGCATGGGAGACTCTAACTGTAGGCTTAACAAACGGAAAAGAAAAACAACTCCGTAATTCCATAATAGGATGTACGGAAATCGTCCAAGGCAACGTTTTCGATGGAGCCGACGGTGTCATGGGCTTAGGCACTAGCTCCTATTCTTTAACTTACAAAGCCGCAGAAAACGCCAACGGCGGCGGCTTCTCTTACTGCCTTGTCGATCATCTCACCGATCAAAGAGCTGTCAGTTATTTCGTCCTCGGCGTTCCTACCCCTTCCACTTCCGCCTCCACTTCCTCTGCTAAACCTCCCGCCAAAATGTCCTACACCAAACTCTACGTTGGCGACCCTTACAGCAGCTTCTACGGCGTCGATCTCATCGGTATCTCCGCCGACGGCCAAATGCTCAACATCCCTCCTCGTGTTTGGGACAGCTATAAAGGCTGCGGTACCATCATCGATTCCGGTACTAGTCTCACTGTGCTTGCCACTCCTGCTTTCGATGTGGTAATGGAAGTTTTGACTTCGAGATTGAAGCAATTTCAGCAAATTGAGATCGAACCTTTCAATTTTTGCTTCAATAATAGCCAATACACTCACGACATGGCGCCGAAGCTCCGATTCCATTTCGGTGACGGAACGGTGTTTGAGCCGCCGACCAAAAGCTACATTGTGTCGGTGGGGGAATTCATTAGTTGTATTGGAATCGTTTCGATGCCTTTTCCGTCCCTCAATATCATTGGAAATATTCTTCAGCAAAATCACCTTTGGCAATTTGATTTCCAAAAGAGAAGAGTCGGTTTTGCCGCTTCCGAATGCATCTAA 1593 45.95 MLGYRKPMSPISNFCFFFLLLFFLSFSSSFLFALGDEANNYNNNDDEDEQQTIRFDLLHRHHPQVSEKLNGDMKIQDLHERMKDIHEHDRNRHRSISKSMNQKQIEDARLRAEAEAATQVEVAKSAILPPATSTPIGMKMISGADFGSSEYFVQLKVGTPAQTFMLIADTGSDLTWLKCRYRRCFGNCSGNVNHKSKNEKKQRFRHALLANQSSTFKTVSCSSTMCTNNLAELFAVAECDTPTSPCVYDYSYAGGASAKGIFAWETLTVGLTNGKEKQLRNSIIGCTEIVQGNVFDGADGVMGLGTSSYSLTYKAAENANGGGFSYCLVDHLTDQRAVSYFVLGVPTPSTSASTSSAKPPAKMSYTKLYVGDPYSSFYGVDLIGISADGQMLNIPPRVWDSYKGCGTIIDSGTSLTVLATPAFDVVMEVLTSRLKQFQQIEIEPFNFCFNNSQYTHDMAPKLRFHFGDGTVFEPPTKSYIVSVGEFISCIGIVSMPFPSLNIIGNILQQNHLWQFDFQKRRVGFAASECI 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24514001 24516949 - MELO3C019610.2.1 Cme11g01660 342323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01660 530 ProSiteProfiles Peptidase family A1 domain profile. 151 525 IPR033121 -
Cme11g01660 530 PANTHER ASPARTIC PROTEINASE NANA, CHLOROPLAST 18 529 - -
Cme11g01660 530 Gene3D Acid Proteases 356 530 IPR021109 -
Cme11g01660 530 PANTHER OS07G0603500 PROTEIN-RELATED 18 529 - -
Cme11g01660 530 CDD pepsin_A_like_plant 150 529 IPR034161 -
Cme11g01660 530 Pfam Xylanase inhibitor C-terminal 378 525 IPR032799 -
Cme11g01660 530 Pfam Xylanase inhibitor N-terminal 151 344 IPR032861 -
Cme11g01660 530 PRINTS Pepsin (A1) aspartic protease family signature 157 177 IPR001461 GO:0004190|GO:0006508
Cme11g01660 530 PRINTS Pepsin (A1) aspartic protease family signature 407 418 IPR001461 GO:0004190|GO:0006508
Cme11g01660 530 PRINTS Pepsin (A1) aspartic protease family signature 501 516 IPR001461 GO:0004190|GO:0006508
Cme11g01660 530 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 166 177 IPR001969 GO:0004190|GO:0006508
Cme11g01660 530 Gene3D Acid Proteases 134 344 IPR021109 -
Cme11g01660 530 SUPERFAMILY Acid proteases 143 529 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01660 - - - csv:101204452 903.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01660 Cme-Chr11:24514001 Cme07g00719 Cme-Chr7:6287035 2.35E-42 dispersed
Cme11g01660 Cme-Chr11:24514001 Cme09g01440 Cme-Chr9:19630436 1.03E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1187 . . . . . . . . . . . . . . . . Cpe16g00700 . . . . . . . Cla02g01844 Cam02g1950 Cec02g1977 Cco02g2016 Clacu02g1931 Cmu02g1880 Cre02g2192 . . . . . . . Cme11g01660 . . . . . . . . Sed01g0777 . . . . . . . Cpe05g01021 Bhi10g00915 Tan05g0569 Cmetu11g0770 . Hepe08g0662 . . . . . . . . . . Csa06g01136 Chy11g01056 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009402 0 1 1 1 1 1 0 1 1 1 1 1 3 1 1 3 1 1 3 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01660 Cme_Chr11 FPKM 34.493122 35.297375 26.93539 25.05406 41.012691 36.959366 43.541126 35.106403 33.560505 35.434982