Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01668 ATGCTTTCCCTTAGATGGAGGTCATGGATGACCAAACATTACATGGAGCGTTATCTAAAGGACCAGTCTTTCTATAAAATTCAGTCCCAATCCATTATTGATAATCCAGACCAGCGGATTGTTGATGACCTCAGTTCTTTCACAGGGACAGCTCTTTCATTTTCTTTGGCGCTCTTCAATTCTACAGTGGATTTAATTTCATTTAGTAACATCTTATATGGTATCTATCCACCATTGTTTGTTATTCTTCTTTTATATTCGATAGGAGGAACGGCAATTAGTGTTTTCCTCGGAAAGGGTTTGGTTAATTTGAACTTCTTGCAAGAAAAGAAAGAAGCAGATTTTCGCTATGGACTTGTCCGCATTCGTGAAAATGCTGAATCAATTGCTTTCTATGGTGGTGAAGAGAATGAGATGCAACTTATTCTGCAACGTTTTAGAAGTGCTGTCGAGAATTTAACTAAATTACTAATAGCATCCAGAAATCTCGAGTTCTTTACCAATGGCTATCGCTACCTTATTCAAATTCTTCCAGCTGCTGTTGTTGCCCCCATGTACTTTTCAGGAAAAATTGAGTTTGGTGTTATTAATCAATCAGTATCTGCTTTCAACCACATCCTGGGGGATTTTTCCATCATTGTATATCAGTTTCAAGCCATCAGTGCTTTCTCAGCAATTATTGATCGCCTAGGTGAATTTGATGATCTCTTGGATGGCAGTGCCCCTAAAGTTCTCTCTAACATTTCAGAAGAGATACGTCTTATGTACTCCCATAGGGAAAGTTCACCTCTACTAGAATCAAATGGGTCCATGGCCCCAGACAAACGCCAGAAATTATTGGAGATAGAGAATATGACTTTAGGGGCACCAAATGGAGCAACTTTGGTGAGAGACTTGACGCTGATAGTTAAAGAAAAGGAGCATTTGCTGGTAATGGGACCTAGTGGATGTGGCAAGACTTCTTTGTTAAGAGTTTTGGCTGGACTTTGGAATGTTGGAAAAGGAAAAATCACATTTTATATAAAAGACTATCCTGAGCAGTTAGTTTCTCCAAATGAAGGTCTCACCGAAGCAGATACAGGAGAAGATGTATCCAAAGAAAATAGTAGACCACTCAACAAGAATTATCAAGGGATATTTTTCCTTCCTCAAAGACCATATATGGTTTTGGGTACACTACGTCAACAGCTGCTTTATCCTACATGGGCTGAAGGTTCTGTCACATCAGCAGGTCATGCTGAATCAAATGTGTTCCCTTCCTTTTTGACAGGTGCGTCGAATATCAACAATGTTGGTGAAAATCCTGATAAGCCGACAACGGATGACCTAATCCAAGTCCTGGATAAAGTGGGTCTTGGCTACCTATTGACTCGTTTCAGTAGTCTGGACATAACTTGTGAATGGTCCAGTGTTCTTTCTCTCGGTGAGCAACAACGTATTGCTTTTGCACGTTTATTGCTTTCAAGACCAAAGTTAGTCCTGCTGGATGAGTCTACGAGTGCTTTAGATGAAGCGAATGAGGCACGTTTATACAAGCTAATTGCAGGTGCTGGGATAACATATATCAGCATTGGCCATCGACGAACTTTACGTAATCACCATAACAGTATTTTGCATATATCAAAGTTGTTCGATGACAATCAACGCAACTGGAACATTGAACCCATTATGAGGGATGATTTGTACGAATTATCAAAGCAGTAA 1704 39.79 MLSLRWRSWMTKHYMERYLKDQSFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLALFNSTVDLISFSNILYGIYPPLFVILLLYSIGGTAISVFLGKGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYGGEENEMQLILQRFRSAVENLTKLLIASRNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSIIVYQFQAISAFSAIIDRLGEFDDLLDGSAPKVLSNISEEIRLMYSHRESSPLLESNGSMAPDKRQKLLEIENMTLGAPNGATLVRDLTLIVKEKEHLLVMGPSGCGKTSLLRVLAGLWNVGKGKITFYIKDYPEQLVSPNEGLTEADTGEDVSKENSRPLNKNYQGIFFLPQRPYMVLGTLRQQLLYPTWAEGSVTSAGHAESNVFPSFLTGASNINNVGENPDKPTTDDLIQVLDKVGLGYLLTRFSSLDITCEWSSVLSLGEQQRIAFARLLLSRPKLVLLDESTSALDEANEARLYKLIAGAGITYISIGHRRTLRNHHNSILHISKLFDDNQRNWNIEPIMRDDLYELSKQ 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24645008 24652643 + MELO3C019602.2.1 Cme11g01668 342331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01668 567 Gene3D ABC transporter type 1, transmembrane domain 2 235 IPR036640 GO:0005524|GO:0016021
Cme11g01668 567 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 222 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme11g01668 567 SUPERFAMILY ABC transporter transmembrane region 5 233 IPR036640 GO:0005524|GO:0016021
Cme11g01668 567 CDD ABCD_peroxisomal_ALDP 280 542 - -
Cme11g01668 567 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 2 556 - -
Cme11g01668 567 Gene3D - 268 549 IPR027417 -
Cme11g01668 567 Pfam ABC transporter transmembrane region 2 1 187 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cme11g01668 567 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 280 565 IPR003439 GO:0005524
Cme11g01668 567 ProSitePatterns ABC transporters family signature. 472 486 IPR017871 GO:0005524
Cme11g01668 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 541 IPR027417 -
Cme11g01668 567 SMART AAA_5 305 544 IPR003593 -
Cme11g01668 567 PANTHER ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3 2 556 - -
Cme11g01668 567 Pfam ABC transporter 297 500 IPR003439 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01136 Cme-Chr7:14734652 Cme11g01668 Cme-Chr11:24645008 4.65E-47 dispersed
Cme11g01668 Cme-Chr11:24645008 Cme11g00691 Cme-Chr11:8174047 3.12E-06 dispersed
Cme11g01668 Cme-Chr11:24645008 Cme09g00284 Cme-Chr9:2201844 5.78E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01668 - - csv:101204943 1066.99