Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01678 ATGAAGTTCTGTTCAGCATCAGTGCTTCCTCTGTTTTTTGTTATTATTAATCTACTTCACCTTGCAACTGCTGACCTGGAATCAGACAAGCAAGCTCTTCTTGACTTTGCATCTTCTGTTCCACATCGTCGGAGCCTTGACTGGAATGATACTACATCAGTATGCACATCTTGGGTTGGTGTTACTTGCAGTGCAGATGGAACTCATGTGCTTACTCTCCGATTACCTGGCATTGGCCTTGTGGGTTCAATTCCTTCTAACACTCTAGGGAAACTCGATGGCCTCAAGATTCTCAGTCTACGTTCCAACCTCCTTAGTGGAAAAATACCGTCCGATATTACCTCACTTCCTTCTCTCCAATATCTTTATCTCCAACATAATAACCTATCTGGTGATGTTCCTTCCTCTCTTTCGCCAACTCTTATTGTATTGAATCTGTCATTCAATTTATTAGAAGGAAAGATTCCAAAGACCGTACAAAATTTGACACAACTAACAGGATTGAACCTCCAGAACAACAATCTTTCCGGTCCTATACCAGATATCAATCTTCCTAAGCTTAAGCATTTCAATATAAGTTATAACCATCTTAATGGTTCTATTCCAACTTTTTTTAATACATTCCCAAATTCGTCCTTCATTGGCAATCCTTCATTATGTGGATTGCCACTAAAAGCTTGCTCCATAGTCCCATCTCCAGCTCCTCACGCTCCACCTTCACCTGCCATTTCTCAAAAGCAGAGCTCCAAAAAACTGAAGATGGGAGTTATCATTGCTATTGCAGTTGGTGGATTTTTCCTTCTATTCCTTGTAGTCCTTTTTGTGGTCTTGTGCTGTTTAAAGAAAAGGGAGGGTGGAGGTGCTGGTGCAAGAAAAGGGAAGGCTTCTGGTGGTGGGAGAAGTGAAAAACCAAAAGAGGAGTTTGGTAGTGGTGTGCAGGAGCCCGAGAAAAACAAGCTAGTGTTTTTTGAAGGTTGTTCATTTAATTTCGATCTAGAAGACCTATTAAGGGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTTTTGGAGGAACCTACCACAGTTGTGGTAAAAAGATTGAAGGAAGTGGTGGTGGGGAAGAGGGAATTTGAACAACAAATGGACATAGTGGGAAGGGTCGGGCAGCACCCGAATGTCATGCCACTCCGAGCATATTATTACTCAAAGGATGAAAAGCTCCTTGTTTATGATTATGTCCCAGGAGGCAGCTTGTCGTCACTCTTGCATGGAAACAGAGGAGGGGAAAGAACTCCACTTGACTGGGACTCAAGAGTGAAAATTGCTCTTGCAACAGCAAAGGGAATTGCTCATATTCATGCAGTGGGTGGTCCAAAATTCACCCATGGAAATATCAAGGCCTCCAATGTTCTCCTAATTCAAGAAATTAATGCTTGTGTCTCTGACTTTGGCCTTACCCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGGTTATCGTGCGCCTGAAGTAATTGAAGCTCGCAAACACACACACAAGTCAGATGTTTACAGTTTTGGCGTTCTTCTTCTTGAAATGTTAACTGGAAAAGCTCCCCTCCAATCACCTGGTCGTGACGAAATGGTCGATCTTCCTCGTTGGGTCCAATCGGTTGTGAGGGAGGAATGGACAGCTGAGGTTTTCGATGTTGAGTTAATGAGATACCAGAATATTGAAGAAGAGATGGTGCAGATGTTACAAATAGCAATGACTTGTGTAGCGAAGTTGCCGGACATGAGACCAAACATGGACGAAGTAGTTAGAATGATTGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCTTCCGAAGAGAACAAATCAAAGGACTCAAATGTGCAGACCCCATGA 1893 43.05 MKFCSASVLPLFFVIINLLHLATADLESDKQALLDFASSVPHRRSLDWNDTTSVCTSWVGVTCSADGTHVLTLRLPGIGLVGSIPSNTLGKLDGLKILSLRSNLLSGKIPSDITSLPSLQYLYLQHNNLSGDVPSSLSPTLIVLNLSFNLLEGKIPKTVQNLTQLTGLNLQNNNLSGPIPDINLPKLKHFNISYNHLNGSIPTFFNTFPNSSFIGNPSLCGLPLKACSIVPSPAPHAPPSPAISQKQSSKKLKMGVIIAIAVGGFFLLFLVVLFVVLCCLKKREGGGAGARKGKASGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMDIVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGERTPLDWDSRVKIALATAKGIAHIHAVGGPKFTHGNIKASNVLLIQEINACVSDFGLTPLMNVPTSRTAGYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDEMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24777222 24783819 - MELO3C019588.2.1 Cme11g01678 342341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01678 630 SUPERFAMILY Protein kinase-like (PK-like) 341 604 IPR011009 -
Cme11g01678 630 Gene3D Ribonuclease Inhibitor 183 228 IPR032675 -
Cme11g01678 630 MobiDBLite consensus disorder prediction 606 621 - -
Cme11g01678 630 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Cme11g01678 630 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Cme11g01678 630 MobiDBLite consensus disorder prediction 606 630 - -
Cme11g01678 630 CDD STKc_IRAK 343 606 - -
Cme11g01678 630 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Cme11g01678 630 PANTHER OS05G0588300 PROTEIN 6 630 - -
Cme11g01678 630 PANTHER LRR RECEPTOR-LIKE KINASE 6 630 - -
Cme11g01678 630 Pfam Leucine rich repeat 83 129 IPR001611 GO:0005515
Cme11g01678 630 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524
Cme11g01678 630 ProSiteProfiles Protein kinase domain profile. 337 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01678 630 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Cme11g01678 630 SUPERFAMILY L domain-like 39 225 - -
Cme11g01678 630 MobiDBLite consensus disorder prediction 285 312 - -
Cme11g01678 630 Pfam Protein kinase domain 340 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01678 630 Pfam Leucine Rich Repeat 141 162 IPR001611 GO:0005515
Cme11g01678 630 MobiDBLite consensus disorder prediction 296 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02089 Cme-Chr8:26503489 Cme11g01678 Cme-Chr11:24777222 0 dispersed
Cme09g00359 Cme-Chr9:3074142 Cme11g01678 Cme-Chr11:24777222 2.50E-65 dispersed
Cme09g01959 Cme-Chr9:23541961 Cme11g01678 Cme-Chr11:24777222 2.10E-169 dispersed
Cme11g01678 Cme-Chr11:24777222 Cme12g01818 Cme-Chr12:24622113 2.57E-176 dispersed
Cme11g01678 Cme-Chr11:24777222 Cme05g01954 Cme-Chr5:28090976 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65261 PF00069 Pkinase 3.30E-36 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01678 - - csv:101221378 1153.66