Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01682 ATGGATCTCCTCCTCTTGGAGAAGACTCTCCTCGGCCTCTTCCTCGCCGTCGTTCTCGCCATCGCCATTTCCAAGCTTCGTGGCAAGCGTTTCAAGCTTCCGCCAGGCCCTTTACCCGTCCCGATCTTCGGAAACTGGCTCCAAGTCGGGGATGATTTGAACCACCGTAACCTCACAGATCTGGCCAAGAAATTTGGCGATATCTTCTTGCTTCGGATGGGACAGAGGAACCTCGTCGTCGTTTCCTCCCCGGAATTAGCCAAGGAAGTGCTCCACACTCAGGGAGTTGAGTTCGGATCTCGAACCAGAAACGTCGTCTTCGATATCTTCACCGGTAAAGGTCAGGATATGGTTTTCACTGTCTATGGTGAACACTGGAGGAAAATGAGACGGATTATGACTGTTCCGTTTTTCACTAACAAAGTAGTACAGCAATACCGTCAAGGATGGGAGTTCGAAGCTCAAAGTGTAGTGGATGATGTGAAGAAGAATCCAGAATCTGCGACTAATGGAATCGTTCTCCGACGGCGGTTGCAACTTATGATGTACAATAATATGTACAGAATTATGTTCGATAGAAGATTCGAGAGTGAAGACGATCCTCTGTTCCACAAACTTAGGGCTCTGAATGGAGAGAGAAGCCGATTAGCACAGAGCTTCGAATACAACTACGGCGATTTCATTCCGATCTTGAGGCCGTTCTTGAGAGGATATCTCAAAATCTGCAAGGAAGTTAAGGAAACGAGGCTGAAACTCTTCAAAGACTATTTCGTCGAGGAGAGGAAGAAACTTGCAAACACGAAGAGCACGACGAACGAGGGATTGAAATGTGCGATTGATCATATATTGGATGCGCAACAGAAGGGAGAAATCAACGAAGATAATGTGCTTTACATTGTTGAGAATATCAATGTGGCAGCAATTGAAACAACATTATGGTCAATTGAATGGGGAATCGCAGAGCTAGTGAACCACCCAGAAATCCAAAGAAAGCTAAGAAATGAACTCGACACCGTACTCGGACCCGGTGTTCCAATCACCGAGCCAGACACACACAAGCTCCCATACCTCCAAGCCGTGATCAAGGAGACTCTCCGCCTTCGTATGGCCATCCCATTACTCGTGCCTCACATGAACCTCCACGATGCCAAGCTCGGGGGCTATGATATTCCAGCCGAGAGCAAGATCCTAGTGAATGCCTGGTGGCTAGCCAACAACCCAGCCAACTGGAAGAACCCGGAAGAGTTCCGGCCCGAGAGGTTCTTGGAAGAGGAATCAAAGGTTGAAGCCAATGGAAATGATTTTAGATACTTGCCTTTTGGCGTTGGGAGAAGGAGCTGCCCAGGAATCATCTTGGCTTTGCCAATTCTTGGTATTACGATTGGGCGTTTGGTTCAAAACTTTGAGCTGCTTCCTCCTCCTGGACAGTCTAAGTTGGATACCTCAGAGAAAGGTGGGCAATTTAGCTTACATATTTTGAAACATTCCACCATTGTTGCTAAGCCAAGAGTGTTCTAA 1518 47.36 MDLLLLEKTLLGLFLAVVLAIAISKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRQGWEFEAQSVVDDVKKNPESATNGIVLRRRLQLMMYNNMYRIMFDRRFESEDDPLFHKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKETRLKLFKDYFVEERKKLANTKSTTNEGLKCAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQRKLRNELDTVLGPGVPITEPDTHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPANWKNPEEFRPERFLEEESKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKLDTSEKGGQFSLHILKHSTIVAKPRVF 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24892758 24896066 + MELO3C019585.2.1 Cme11g01682 342345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01682 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
Cme11g01682 505 SUPERFAMILY Cytochrome P450 34 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
Cme11g01682 505 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g01682 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Cme11g01682 505 Gene3D Cytochrome P450 27 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g00849 Cme11g01682 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01240 Cme-Chr5:20040928 Cme11g01682 Cme-Chr11:24892758 0 dispersed
Cme05g01241 Cme-Chr5:20045273 Cme11g01682 Cme-Chr11:24892758 0 dispersed
Cme11g01682 Cme-Chr11:24892758 Cme12g00007 Cme-Chr12:134366 0 dispersed
Cme11g01682 Cme-Chr11:24892758 Cme02g02011 Cme-Chr2:26320246 1.43E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01682 K00487 - csv:101221846 980.319