Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01709 | ATGGAATTTTTTTTCTCTGCTACATTAGGTGATCCTAGTGGCGGCGGCCGGCGGAGACAGCCGGACCTTGCGGTGGTGGGCAAGGGTAATCCGCCGTTGTCTCCACCACTTTACTCTCCTTCTTCCTTCTTCACTATTCCTCCTGGTATCAGCCCCACCCAATTACTTGATTCCCCTCTTCTTCTCAACTCTTCTCCTATTCTGCTATCGCCGTCCACCAGAGATTTGAGAAAATCAACGACTAACAATTCCGGCCATCACCAACAGAACATCAAACAAGAACACAACATTACTGAATTCTCATTTCCTCGTAATCACACCACAAAATCATCATCATCATCAATGTTTCAATCCTCTTCAACAGTGCAAACTGAGGCATGGGGTTTGGAATCGGAGAGCGACCGGGGAGAATGGGAGATGAGAAACAGATCAGGATCTGAGGATGGGTTTAATTGGAGAAAATATGGTCAAAAAGTGGTAAAAGGAAGTGAAAATCCTAGAAGCTATTACAAATGTACATTCCCAAATTGCCCTGTTAGAAAACAAGTTGAAAGATCTTTGAATAACAATGCTCAAATTACTGAAATTGTTTACAAAAGTAAACATAACCATCCAAAACCAGACTTCACTAGAAGAAGGAAGAGTGAGAGTGAGAAGGAAATTATGACAACAGGAGGAGGGGGGAAAACAATGAGAGAAGAAAGGATTGTAGTTCAAACAATTAGCAATGTGGATAAATTAGATGATGGTTACTGGTGGAGAAAATATGGACAGAAAGTGGTAAAGGGAAATCCAAATCCAAGGAGCTATTACAAGTGCACATATCCAGGTTGTGGAGTGAGGAAGCATATAGAGAGAGCATCCCATGATCTTAGGGCAGTTGTCACTACCTATGAAGGGAAGCACAACCACGATATTCCGGCAGCCCGTGGCGGCAAACCCATACCTTAG | 951 | 43.11 | MEFFFSATLGDPSGGGRRRQPDLAVVGKGNPPLSPPLYSPSSFFTIPPGISPTQLLDSPLLLNSSPILLSPSTRDLRKSTTNNSGHHQQNIKQEHNITEFSFPRNHTTKSSSSSMFQSSSTVQTEAWGLESESDRGEWEMRNRSGSEDGFNWRKYGQKVVKGSENPRSYYKCTFPNCPVRKQVERSLNNNAQITEIVYKSKHNHPKPDFTRRRKSESEKEIMTTGGGGKTMREERIVVQTISNVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYPGCGVRKHIERASHDLRAVVTTYEGKHNHDIPAARGGKPIP | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25170183 | 25174831 | + | MELO3C025686.2.1 | Cme11g01709 | 342372 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01709 | 316 | ProSiteProfiles | WRKY domain profile. | 147 | 207 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g01709 | 316 | MobiDBLite | consensus disorder prediction | 105 | 144 | - | - | |
Cme11g01709 | 316 | PANTHER | OS04G0471700 PROTEIN | 223 | 312 | - | - | |
Cme11g01709 | 316 | SUPERFAMILY | WRKY DNA-binding domain | 144 | 207 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g01709 | 316 | Pfam | WRKY DNA -binding domain | 147 | 205 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g01709 | 316 | Pfam | WRKY DNA -binding domain | 248 | 305 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g01709 | 316 | ProSiteProfiles | WRKY domain profile. | 242 | 307 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g01709 | 316 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 223 | 312 | IPR044810 | GO:0003700 | |
Cme11g01709 | 316 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 38 | 121 | IPR044810 | GO:0003700 | |
Cme11g01709 | 316 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 86 | 219 | IPR044810 | GO:0003700 | |
Cme11g01709 | 316 | MobiDBLite | consensus disorder prediction | 202 | 220 | - | - | |
Cme11g01709 | 316 | PANTHER | OS04G0471700 PROTEIN | 38 | 121 | - | - | |
Cme11g01709 | 316 | PANTHER | OS04G0471700 PROTEIN | 86 | 219 | - | - | |
Cme11g01709 | 316 | Gene3D | WRKY domain | 234 | 300 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g01709 | 316 | MobiDBLite | consensus disorder prediction | 105 | 128 | - | - | |
Cme11g01709 | 316 | MobiDBLite | consensus disorder prediction | 8 | 30 | - | - | |
Cme11g01709 | 316 | MobiDBLite | consensus disorder prediction | 130 | 144 | - | - | |
Cme11g01709 | 316 | SUPERFAMILY | WRKY DNA-binding domain | 239 | 307 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g01709 | 316 | SMART | WRKY_cls | 146 | 206 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g01709 | 316 | SMART | WRKY_cls | 247 | 306 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g01709 | 316 | MobiDBLite | consensus disorder prediction | 202 | 229 | - | - | |
Cme11g01709 | 316 | Gene3D | WRKY domain | 137 | 208 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme10g00381 | Cme-Chr10:2444550 | Cme11g01709 | Cme-Chr11:25170183 | 3.18E-15 | dispersed | |
Cme11g01709 | Cme-Chr11:25170183 | Cme12g00015 | Cme-Chr12:206999 | 1.96E-43 | dispersed | |
Cme11g01709 | Cme-Chr11:25170183 | Cme09g00236 | Cme-Chr9:1797171 | 1.57E-16 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42215 | PF03106 | WRKY | 3.00E-26 | CL0274 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01709 | K13424 | - | csv:101205221 | 490.73 |