Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01709 ATGGAATTTTTTTTCTCTGCTACATTAGGTGATCCTAGTGGCGGCGGCCGGCGGAGACAGCCGGACCTTGCGGTGGTGGGCAAGGGTAATCCGCCGTTGTCTCCACCACTTTACTCTCCTTCTTCCTTCTTCACTATTCCTCCTGGTATCAGCCCCACCCAATTACTTGATTCCCCTCTTCTTCTCAACTCTTCTCCTATTCTGCTATCGCCGTCCACCAGAGATTTGAGAAAATCAACGACTAACAATTCCGGCCATCACCAACAGAACATCAAACAAGAACACAACATTACTGAATTCTCATTTCCTCGTAATCACACCACAAAATCATCATCATCATCAATGTTTCAATCCTCTTCAACAGTGCAAACTGAGGCATGGGGTTTGGAATCGGAGAGCGACCGGGGAGAATGGGAGATGAGAAACAGATCAGGATCTGAGGATGGGTTTAATTGGAGAAAATATGGTCAAAAAGTGGTAAAAGGAAGTGAAAATCCTAGAAGCTATTACAAATGTACATTCCCAAATTGCCCTGTTAGAAAACAAGTTGAAAGATCTTTGAATAACAATGCTCAAATTACTGAAATTGTTTACAAAAGTAAACATAACCATCCAAAACCAGACTTCACTAGAAGAAGGAAGAGTGAGAGTGAGAAGGAAATTATGACAACAGGAGGAGGGGGGAAAACAATGAGAGAAGAAAGGATTGTAGTTCAAACAATTAGCAATGTGGATAAATTAGATGATGGTTACTGGTGGAGAAAATATGGACAGAAAGTGGTAAAGGGAAATCCAAATCCAAGGAGCTATTACAAGTGCACATATCCAGGTTGTGGAGTGAGGAAGCATATAGAGAGAGCATCCCATGATCTTAGGGCAGTTGTCACTACCTATGAAGGGAAGCACAACCACGATATTCCGGCAGCCCGTGGCGGCAAACCCATACCTTAG 951 43.11 MEFFFSATLGDPSGGGRRRQPDLAVVGKGNPPLSPPLYSPSSFFTIPPGISPTQLLDSPLLLNSSPILLSPSTRDLRKSTTNNSGHHQQNIKQEHNITEFSFPRNHTTKSSSSSMFQSSSTVQTEAWGLESESDRGEWEMRNRSGSEDGFNWRKYGQKVVKGSENPRSYYKCTFPNCPVRKQVERSLNNNAQITEIVYKSKHNHPKPDFTRRRKSESEKEIMTTGGGGKTMREERIVVQTISNVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYPGCGVRKHIERASHDLRAVVTTYEGKHNHDIPAARGGKPIP 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25170183 25174831 + MELO3C025686.2.1 Cme11g01709 342372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01709 316 ProSiteProfiles WRKY domain profile. 147 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g01709 316 MobiDBLite consensus disorder prediction 105 144 - -
Cme11g01709 316 PANTHER OS04G0471700 PROTEIN 223 312 - -
Cme11g01709 316 SUPERFAMILY WRKY DNA-binding domain 144 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme11g01709 316 Pfam WRKY DNA -binding domain 147 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g01709 316 Pfam WRKY DNA -binding domain 248 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g01709 316 ProSiteProfiles WRKY domain profile. 242 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g01709 316 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 223 312 IPR044810 GO:0003700
Cme11g01709 316 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 38 121 IPR044810 GO:0003700
Cme11g01709 316 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 219 IPR044810 GO:0003700
Cme11g01709 316 MobiDBLite consensus disorder prediction 202 220 - -
Cme11g01709 316 PANTHER OS04G0471700 PROTEIN 38 121 - -
Cme11g01709 316 PANTHER OS04G0471700 PROTEIN 86 219 - -
Cme11g01709 316 Gene3D WRKY domain 234 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme11g01709 316 MobiDBLite consensus disorder prediction 105 128 - -
Cme11g01709 316 MobiDBLite consensus disorder prediction 8 30 - -
Cme11g01709 316 MobiDBLite consensus disorder prediction 130 144 - -
Cme11g01709 316 SUPERFAMILY WRKY DNA-binding domain 239 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme11g01709 316 SMART WRKY_cls 146 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g01709 316 SMART WRKY_cls 247 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g01709 316 MobiDBLite consensus disorder prediction 202 229 - -
Cme11g01709 316 Gene3D WRKY domain 137 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00381 Cme-Chr10:2444550 Cme11g01709 Cme-Chr11:25170183 3.18E-15 dispersed
Cme11g01709 Cme-Chr11:25170183 Cme12g00015 Cme-Chr12:206999 1.96E-43 dispersed
Cme11g01709 Cme-Chr11:25170183 Cme09g00236 Cme-Chr9:1797171 1.57E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42215 PF03106 WRKY 3.00E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01709 K13424 - csv:101205221 490.73