Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01727 CTCTTTTTCCATCTTTTGGATTCCCTCTTCAACTCTCCAAATCCAATTCTCAACATTCGGAAAAAAAACCCATTACTTTTAATCATTGGGTTTTTCTTTTCTTCTTTTAGTATTGAAGAACAAAATTATTGTGTACTAATATTATTGCCAATGGGAGTTGGTTCATCGCCTTGCGCCTCTTGTAAATTGCTACGACGACGGTGTGCAAAAGACTGTATTTTTGCTCCTTATTTCCCTCCCGAAGACCCTCTCAAGTTCGCCATTGTTCATAAGATCTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAGGTTCCAATAGATCAAAGAGCAGATGCAGTGAGTAGTATGGTATATGAAGCGAGTGCAAGAATGCAAGATCCAGTATATGGTTGTGTAGGAACAATCGCGTTTTTGCAAAACGAAGTGTCTCGATTAGAAATTCAACTAGGGGCAGCTCAAGCAGAGATTTTGACATTACAAATGCGACAACAAGAGACCTCAACAACATTTCCAACGACTACAACCCAAATGGATCAAGATGAACAAAATCTTATGATTTTCTCAAATACCGATTCTTCTAATTCATTACATATTTTTCAGGCAACGGAGGATTATTACCATATGTGGACTTGA 636 38.21 LFFHLLDSLFNSPNPILNIRKKNPLLLIIGFFFSSFSIEEQNYCVLILLPMGVGSSPCASCKLLRRRCAKDCIFAPYFPPEDPLKFAIVHKIFGASNVSKMLQEVPIDQRADAVSSMVYEASARMQDPVYGCVGTIAFLQNEVSRLEIQLGAAQAEILTLQMRQQETSTTFPTTTTQMDQDEQNLMIFSNTDSSNSLHIFQATEDYYHMWT 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25352249 25353350 + MELO3C025701.2.1 Cme11g01727 342390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01727 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 51 186 - -
Cme11g01727 211 Coils Coil 136 163 - -
Cme11g01727 211 ProSiteProfiles LOB domain profile. 56 157 IPR004883 -
Cme11g01727 211 Pfam Lateral organ boundaries (LOB) domain 57 154 IPR004883 -
Cme11g01727 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 51 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00420 Cme-Chr9:3984698 Cme11g01727 Cme-Chr11:25352249 2.94E-47 dispersed
Cme10g01432 Cme-Chr10:17308943 Cme11g01727 Cme-Chr11:25352249 1.01E-61 dispersed
Cme11g01727 Cme-Chr11:25352249 Cme12g00980 Cme-Chr12:17143350 1.33E-54 dispersed
Cme12g01670 Cme-Chr12:23697413 Cme11g01727 Cme-Chr11:25352249 1.71E-45 dispersed
Cme11g01727 Cme-Chr11:25352249 Cme11g01769 Cme-Chr11:25921359 1.80E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42216 PF03195 LOB 6.20E-39 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01727 - - csv:101207667 284.263