Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01748 ATGGAACCGTTGGATAAACCAGCGCCCAAGTCCTCCCCACTGGCGCCATTCCCTCGGGACTCGCGAGGATCCTTAGAGGTTTTCAATCCCTCCTCCACTTACTCGTCCCGATCGATCAATTCCATCCCTCGGACGAACCCAACGTGGCCCAATTGGGCAGAGCCACGTAGCAGTGCTGAATCGGATTCAACCAAACTCGCCGCTAAACCGCCGAGTAAAACCGGCGAGGAGATTACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCCCCACAACCCTCATCCCCACTCGCTCAAAAAACCATCTCGGCGATTCTGAGCGAAAAATCGACGTCGGGGAAGTCGCAATCGCAATCCGCGGACGAAGTGGGTTCCGCCGCCTTACGCGCCGCCGAGTGGGGATTGGTACTGAAAACCGATACGGAAACTGGGAAGCCGCAGGGCGTTGGGGTTAGAACTTCGGGCGGCGATGAACAGAATACGAAACAGGAAAACTCCCGAAGGACTTCGAATAATTCGGTGCGGAGTTCGGGCGACATGTCGGAAGAAGGGGCAAGAGAAAGGGGGATTCCGAGAGTTTCTGAAGACTTAAAAGACGCTTTGTCGACATTTCAACAAACATTTGTGGTTTCTGATGCTACTAAACCTGATTATCCTATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAAGTTATTGGAAGAAATTGTCGATTTTTACAAGGTGCAGATACAGACCCAGAAGATGTGGCTAAGATCAGAGAAGCTTTACAAGCTGGGACAAGTTACTGTGGGAGGTTGTTGAATTACAAGAAAGATGGGACCCCTTTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTCAAATTTATTGGAATGCAAGTGGAGGTAAGCAAACACACGGAAGGATTCAAGGATAAGATGTTACGTCCCAATGGATTGCCAGAATCATTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCAACGAGTTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCTCGGTCTGTAAGTGAACATAGGCCTCGGGCTCTAAGTGAATCTATGAACCGGAGGTTATTTAGAAAGTCCGGCGGCGGGGGTGACGGGGGTAACGATGAGGAGGACAGAATTGAACCGAGTATGATGGTGAGACGAAAGTCAGAGAGTGCAGCACCTCCAACCGGTGGAAGATCGCAGGGAGGAAGTAGAAGGTCGATGCAGCGTATTAATGAGCTGCCCGACAAAAAACCCAAAAAGTCTACCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGAAGAAAGCTTTGGCATTGAAGAAGGTTCGGATGACGATAATGAGTCCGATGACGATGTTAGACCCGATAGTGTTGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACTACCCTTGAACGTATAGAAAAAAACTTTGTGATTACTGATCCTAGATTGCCTGACAATCCCATTATATTTGCATCTGATAGCTTTCTGGAGCTAACCGAGTACAGTAGAGAAGAAATCTTGGGAAGAAATTGCAGATTTCTACAAGGTCCTGAAACCGATCGAGCAACCGTCAAGAAAATAAGAGATGCAATCGACAATCAAACAGACGTTACAGTGCAGCTTATTAACTACACAAAAAGTGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGTGAAGTCCAATATTTTATTGGAGTTCAACTCGACGGTAGTCAACATGTGGAACCACTAAGCAATTGCATAGCGGAAACTACTGCAAAGGAGGGCGAAAAACTGATAAAAGAAACTGCTGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCATTCTAAGTTGGTTCAACCAAAACCTCACAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGAAGATTTTGGACAGCGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCTGGTGATACTGGCAGTGTGCATTTGGTAGAACTGTGTGGGACTGATCAATACTTTGCAATGAAGGCAATGGATAAGGGTGTCATGCTCAACCGCAACAAGGTGCATAGAGCTTGTGCCGAAAGGGAAATACTCGACATGCTGGATCATCCTTTTCTTCCTGCGTTATACGCTTCGTTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGACAGACAACCCACAAAGGTCATAAAGGAAGATGCTGTTAGATTTTATGCTGCTGAAGTTGTCGTGGCATTGGAGTATCTCCATTGTCAAGGGATAATTTATCGAGATCTAAAGCCTGAGAATGTTCTACTCCAGAGCAACGGCCACGTTGCCTTGACGGATTTTGATTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTGCTTCCAACAGCAAATGAGAAGAAAAAACAATCAAAAGCTCAACAGACTCCGATCTTTATGGCCGAACCAATGCGAGCTTCGAACTCCTTTGTTGGAACTGAAGAGTATATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCCGTGGACTGGTGGGCTTTGGGCATCCTTCTATATGAAATGCTTTATGGATACACACCCTTTAGGGGGAAGACAAGGCAAAAGACCTTTGCCAACATTCTCCATAAGGATCTTAAATTTCCAAGAAGTATATCGGCTAGTCTCAATGCAAAGCAGTTAATTTTTAGGTTATTGCATAGAGACCCCAAAAATCGATTAGGTTCTCGAGAAGGAGCCAGTGAAATCAAACGACATCCTTTCTTCCGAGGCGTCAATTGGGCGCTCGTCCGTTGCATGAATCCTCCCGAGCTCGAAGCGCCTCTTTTCCAGACCACTGATGGCGAAAAAGATGCTAATAAAGCATCAGATTTTGATCCAAAAGAACTTGAACTCAGTGTTTTCTGA 3066 45.47 MEPLDKPAPKSSPLAPFPRDSRGSLEVFNPSSTYSSRSINSIPRTNPTWPNWAEPRSSAESDSTKLAAKPPSKTGEEITSWMAFKDSNPSPQPSSPLAQKTISAILSEKSTSGKSQSQSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEQNTKQENSRRTSNNSVRSSGDMSEEGARERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMLRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSVSEHRPRALSESMNRRLFRKSGGGGDGGNDEEDRIEPSMMVRRKSESAAPPTGGRSQGGSRRSMQRINELPDKKPKKSTRRSFMGIMRKSQSNVEESFGIEEGSDDDNESDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVKKIRDAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIAETTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKLVQPKPHRKDSPSWKAIQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVALTDFDLSCLTSCKPQLLLPTANEKKKQSKAQQTPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQTTDGEKDANKASDFDPKELELSVF 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25620429 25632371 - MELO3C025720.2.1 Cme11g01748 342411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01748 1021 ProSiteProfiles Protein kinase domain profile. 688 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01748 1021 SUPERFAMILY PYP-like sensor domain (PAS domain) 503 602 IPR035965 -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 382 398 - -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 407 421 - -
Cme11g01748 1021 Gene3D PAS domain 207 371 - -
Cme11g01748 1021 TIGRFAM sensory_box: PAS domain S-box protein 512 602 IPR000014 -
Cme11g01748 1021 TIGRFAM sensory_box: PAS domain S-box protein 220 312 IPR000014 -
Cme11g01748 1021 SUPERFAMILY Protein kinase-like (PK-like) 667 996 IPR011009 -
Cme11g01748 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Cme11g01748 1021 Gene3D Phosphorylase Kinase; domain 1 687 1004 - -
Cme11g01748 1021 CDD PAS 220 309 IPR000014 -
Cme11g01748 1021 Gene3D PAS domain 475 640 - -
Cme11g01748 1021 ProSiteProfiles PAC domain profile. 561 615 IPR000700 -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 1 123 - -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 25 68 - -
Cme11g01748 1021 CDD STKc_phototropin_like 686 994 - -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 352 483 - -
Cme11g01748 1021 Pfam Protein kinase domain 690 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01748 1021 Pfam PAS domain 510 602 IPR000014 -
Cme11g01748 1021 Pfam PAS domain 214 310 IPR000014 -
Cme11g01748 1021 PANTHER FLIPPASE KINASE 1-RELATED 141 1021 - -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 81 123 - -
Cme11g01748 1021 ProSiteProfiles PAS repeat profile. 491 560 IPR000014 -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 138 191 - -
Cme11g01748 1021 SMART pac_2 564 606 IPR001610 -
Cme11g01748 1021 SMART pac_2 270 312 IPR001610 -
Cme11g01748 1021 SMART pas_2 489 558 IPR000014 -
Cme11g01748 1021 SMART pas_2 195 264 IPR000014 -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 994 1021 - -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 153 179 - -
Cme11g01748 1021 CDD PAS 502 602 IPR000014 -
Cme11g01748 1021 Gene3D Transferase(Phosphotransferase) domain 1 772 998 - -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 456 471 - -
Cme11g01748 1021 ProSiteProfiles PAS repeat profile. 193 264 IPR000014 -
Cme11g01748 1021 PANTHER PHOTOTROPIN-1 141 1021 - -
Cme11g01748 1021 SUPERFAMILY PYP-like sensor domain (PAS domain) 214 306 IPR035965 -
Cme11g01748 1021 SMART serkin_6 688 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01748 1021 ProSiteProfiles PAC domain profile. 267 321 IPR000700 -
Cme11g01748 1021 MobiDBLite consensus disorder prediction 441 455 - -
Cme11g01748 1021 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Cme11g01748 1021 MobiDBLite consensus disorder prediction 354 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00452 Cme-Chr7:3233979 Cme11g01748 Cme-Chr11:25620429 3.16E-14 dispersed
Cme11g01018 Cme-Chr11:14646603 Cme11g01748 Cme-Chr11:25620429 0 dispersed
Cme11g01748 Cme-Chr11:25620429 Cme12g00788 Cme-Chr12:14316880 5.90E-112 dispersed
Cme11g01748 Cme-Chr11:25620429 Cme11g01897 Cme-Chr11:27108962 5.70E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65263 PF00069 Pkinase 2.70E-63 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01748 K20715 - csv:101214662 1920.59