Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01750 ATGGGTTGCTTTAGCCATATCAAAAAACAAAGGAAAAGATTATTAGGGAGCAAATTACAAAGCATTCAACCAGCTTCTTCAGCCAATGAAGTAAAAGTAAGAAGGGAATTGAAAGTAAAAACAAGGGAAGAAGCAAAAGAGGTGGTCTGTGAAAATGACCACCGGTTGGGTTCAAATATAAACAAAGGGGTTTGTAGTGAAGCAAAAGCAAAGGAAGAGGTAAAAACATTTACATTCCATGAGTTAGCAGAAGCAACAGGAAATTTCAAGTCGGATTGCTTTCTAGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGCCATTTGAGAAGAATTAACAAGCTTGTAGCTATAAAGCAACTTGATTGGAGTCGAGGTCAAGGAATAAGAGAATTTATGGTGGAAGTTGTAACATTAAGTTTGGCCAATGACCCAAACCTTGTCAAATTGATAGGCTATTGTGTGGAGGGTGACCAAAGATTGTTGGTTTATGAGTTCATGCCATTAGGATCATTGGACAGACATTTGCACGATGTTCCAGCAGGGGAAAAAGTGCTTGATTGGAATACAAGAATGAACATAGCAGTAGGAGCAGCGAAGGGATTGGAATATTTACACACCAAAATGAGTCCAGCAGTTATATATAGAGATTTAAAATGCTCAAATATTTTGTTGGGTGAAGGTTATTGGGCAAAGCTGTCAGATTTTGGGCTAGCAAAAGTTGGTCCAAGTGGTGATAACACTCATGTGTCTACTAGAGTTATGGGCACTTACGGATATTGTGCACCAGATTATGCAATGACTGGCCAATTGACATTCAAATCTGATATCTATAGTTTTGGGGTTGTTTTATTGGAACTCATCACCGGTAGAAAAGCTATCGATCATACCAGACCTTCAAATGAGCTCAGTTTGGTAGCATGGGCAAGACCATTGTTTCGAGACCGAAAGAGATTTATAGTAATGGCAGATCCAAGGTTAGATGGTCAATTTCCTATTAGAGGATTGTATCAAGCTCTTGCAATTGCAGCAATGTGTCTCCAAGAACAACCTACAATGAGACCATCAATATCAGAAGTTGTCGCAGCGTTAAATTTTCTTGCTTCTCGAAAATATCCTCAAAGAATGAGTGATTAG 1134 38.89 MGCFSHIKKQRKRLLGSKLQSIQPASSANEVKVRRELKVKTREEAKEVVCENDHRLGSNINKGVCSEAKAKEEVKTFTFHELAEATGNFKSDCFLGEGGFGKVYKGHLRRINKLVAIKQLDWSRGQGIREFMVEVVTLSLANDPNLVKLIGYCVEGDQRLLVYEFMPLGSLDRHLHDVPAGEKVLDWNTRMNIAVGAAKGLEYLHTKMSPAVIYRDLKCSNILLGEGYWAKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTRPSNELSLVAWARPLFRDRKRFIVMADPRLDGQFPIRGLYQALAIAAMCLQEQPTMRPSISEVVAALNFLASRKYPQRMSD 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25640838 25644921 - MELO3C025722.2.1 Cme11g01750 342413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01750 377 Gene3D Phosphorylase Kinase; domain 1 61 165 - -
Cme11g01750 377 ProSiteProfiles Protein kinase domain profile. 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01750 377 CDD STKc_IRAK 95 364 - -
Cme11g01750 377 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 373 - -
Cme11g01750 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Cme11g01750 377 PANTHER OS07G0668900 PROTEIN 1 373 - -
Cme11g01750 377 SUPERFAMILY Protein kinase-like (PK-like) 74 372 IPR011009 -
Cme11g01750 377 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Cme11g01750 377 Gene3D Transferase(Phosphotransferase) domain 1 166 372 - -
Cme11g01750 377 Pfam Protein kinase domain 94 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01750 377 SMART serkin_6 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01750 Cme-Chr11:25640838 Cme12g00287 Cme-Chr12:3527094 0 dispersed
Cme11g01750 Cme-Chr11:25640838 Cme04g02570 Cme-Chr4:31786326 3.57E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65264 PF00069 Pkinase 2.60E-42 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01750 - - csv:101221327 683.715