Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01754 ATGTTTGATCTTAATCTCAATGTTGACTCGCCTGATGCGGCTCAGAATGAGGACTCTGTTGTGTTCTTTGAGAAGCTTCCTCAAGGTTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCCTCGATTGTCAATGCGGATACCTCCAGCAATGGTGGCGATGATGACTCGTGCTCCACACGCGCCGGTGGTGAGCTCTTCACGTTTAACTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTCACGAAAGAGCTTTTTCCAATAGGTGGAACGGTGAATGCTGACTTCGGGATTCTTCAAGGGCATAACTCCGCCTCTTCTTCGTCAACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCGGCAGGGGAGGGGAGAACGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCCCGGAGCTCACAGTATAGGGGCGTTACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATCTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCGTATGATCGAGCTGCTATCAAGTTCAGAGGGGTTGATGCTGATATTAATTTCAATCTTAGTGATTATGAGGATGATCTGAAACAGATGAAAAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTGACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAACTCCTTGGGAAAAAGTGA 819 49.69 MFDLNLNVDSPDAAQNEDSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSANDVVTKELFPIGGTVNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRTVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKK 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25705936 25709362 - MELO3C025726.2.1 Cme11g01754 342417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01754 272 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
Cme11g01754 272 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Cme11g01754 272 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Cme11g01754 272 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 272 - -
Cme11g01754 272 MobiDBLite consensus disorder prediction 30 58 - -
Cme11g01754 272 MobiDBLite consensus disorder prediction 129 158 - -
Cme11g01754 272 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677
Cme11g01754 272 CDD AP2 157 215 IPR001471 GO:0003700|GO:0006355
Cme11g01754 272 MobiDBLite consensus disorder prediction 28 58 - -
Cme11g01754 272 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 272 - -
Cme11g01754 272 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00585 Cme-Chr8:3713741 Cme11g01754 Cme-Chr11:25705936 3.16E-11 dispersed
Cme08g02331 Cme-Chr8:30217408 Cme11g01754 Cme-Chr11:25705936 1.19E-06 dispersed
Cme10g00822 Cme-Chr10:5397762 Cme11g01754 Cme-Chr11:25705936 6.68E-82 dispersed
Cme11g00347 Cme-Chr11:3595067 Cme11g01754 Cme-Chr11:25705936 7.69E-11 dispersed
Cme11g01754 Cme-Chr11:25705936 Cme08g00672 Cme-Chr8:4410391 7.82E-12 dispersed
Cme11g01754 Cme-Chr11:25705936 Cme04g02563 Cme-Chr4:31757832 2.65E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42219 PF00847 AP2 1.80E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01754 K09284 - csv:101222024 526.168