Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01754 | ATGTTTGATCTTAATCTCAATGTTGACTCGCCTGATGCGGCTCAGAATGAGGACTCTGTTGTGTTCTTTGAGAAGCTTCCTCAAGGTTCGGGGAACCAAATGGATGAATCAGGAACTTCCAATTCCTCGATTGTCAATGCGGATACCTCCAGCAATGGTGGCGATGATGACTCGTGCTCCACACGCGCCGGTGGTGAGCTCTTCACGTTTAACTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTCACGAAAGAGCTTTTTCCAATAGGTGGAACGGTGAATGCTGACTTCGGGATTCTTCAAGGGCATAACTCCGCCTCTTCTTCGTCAACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCGGCAGGGGAGGGGAGAACGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCCCGGAGCTCACAGTATAGGGGCGTTACATTCTACCGGAGGACTGGGCGGTGGGAATCTCATATCTGGGACTGCGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCGTATGATCGAGCTGCTATCAAGTTCAGAGGGGTTGATGCTGATATTAATTTCAATCTTAGTGATTATGAGGATGATCTGAAACAGATGAAAAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTGACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAACTCCTTGGGAAAAAGTGA | 819 | 49.69 | MFDLNLNVDSPDAAQNEDSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFNFEILKAGSANDVVTKELFPIGGTVNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRTVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLSDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKK | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 25705936 | 25709362 | - | MELO3C025726.2.1 | Cme11g01754 | 342417 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01754 | 272 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Cme11g01754 | 272 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700|GO:0006355 | |
Cme11g01754 | 272 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700|GO:0006355 | |
Cme11g01754 | 272 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 272 | - | - | |
Cme11g01754 | 272 | MobiDBLite | consensus disorder prediction | 30 | 58 | - | - | |
Cme11g01754 | 272 | MobiDBLite | consensus disorder prediction | 129 | 158 | - | - | |
Cme11g01754 | 272 | SUPERFAMILY | DNA-binding domain | 156 | 214 | IPR016177 | GO:0003677 | |
Cme11g01754 | 272 | CDD | AP2 | 157 | 215 | IPR001471 | GO:0003700|GO:0006355 | |
Cme11g01754 | 272 | MobiDBLite | consensus disorder prediction | 28 | 58 | - | - | |
Cme11g01754 | 272 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 1 | 272 | - | - | |
Cme11g01754 | 272 | Gene3D | AP2/ERF domain | 156 | 215 | IPR036955 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00585 | Cme-Chr8:3713741 | Cme11g01754 | Cme-Chr11:25705936 | 3.16E-11 | dispersed | |
Cme08g02331 | Cme-Chr8:30217408 | Cme11g01754 | Cme-Chr11:25705936 | 1.19E-06 | dispersed | |
Cme10g00822 | Cme-Chr10:5397762 | Cme11g01754 | Cme-Chr11:25705936 | 6.68E-82 | dispersed | |
Cme11g00347 | Cme-Chr11:3595067 | Cme11g01754 | Cme-Chr11:25705936 | 7.69E-11 | dispersed | |
Cme11g01754 | Cme-Chr11:25705936 | Cme08g00672 | Cme-Chr8:4410391 | 7.82E-12 | dispersed | |
Cme11g01754 | Cme-Chr11:25705936 | Cme04g02563 | Cme-Chr4:31757832 | 2.65E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42219 | PF00847 | AP2 | 1.80E-10 | CL0081 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01754 | K09284 | - | csv:101222024 | 526.168 |