Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01769 CCATTCAAAATTAAAATCATAATTTTCAAACTTAACTCATTTCATATTCATACGCTTTTCTGTTTCCTCTATTTATATCTCTGTTTTCCCATTTCCAAATCCAAACGAAACCCTCTCCGTTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCGTTCCTTTGCTCCGATAATCGGAAAATGGAAGGAAGTGACTCACTCACAATCACCACCGTTTCTTCAACTCCATTATCCCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCACCGCCGCCCGTTATTCTCAGTCCATGTGCGGCCTGTAAGATTTTGCGACGCCGATGTGCCGAGCGATGTGTATTGGCTCCCTATTTCCCTCCCACTGAACCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGTAATATCATCAAATTCCTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCAAGGATTAGAGACCCTGTTTATGGGTCAGCAGGGGCCATTTGCCAACTCCAAAAGCAAGTCAATGAGCTTCAAGCCCAACTAGCCAAAGCTCAGGCAGAGGTTGTCAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAATCTCATCAATCTTTTGATGAATTCAATGGCAGCCCACATAATGGATTATTACAGAGCATTAATCCTCCAAGTTACTTTGATGATAGCAATAATGTAAACTCGTTGTGGGAACCCCTTTGGACATGA 786 44.66 PFKIKIIIFKLNSFHIHTLFCFLYLYLCFPISKSKRNPLRFFSSSSSSSSPPPPPFLCSDNRKMEGSDSLTITTVSSTPLSQSPSSSSSPAPPPPVILSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHQSFDEFNGSPHNGLLQSINPPSYFDDSNNVNSLWEPLWT 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25921359 25923127 + MELO3C025742.2.1 Cme11g01769 342432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01769 261 Coils Coil 179 206 - -
Cme11g01769 261 ProSiteProfiles LOB domain profile. 99 200 IPR004883 -
Cme11g01769 261 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 72 258 - -
Cme11g01769 261 Pfam Lateral organ boundaries (LOB) domain 100 197 IPR004883 -
Cme11g01769 261 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 72 258 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme11g01769 Cme12g00332 CCT
Cme11g01769 Cme12g00332 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00609 Cme-Chr9:6373633 Cme11g01769 Cme-Chr11:25921359 2.09E-27 dispersed
Cme10g00811 Cme-Chr10:5318417 Cme11g01769 Cme-Chr11:25921359 5.96E-74 dispersed
Cme11g01769 Cme-Chr11:25921359 Cme12g00335 Cme-Chr12:4617591 1.60E-79 dispersed
Cme06g00964 Cme-Chr6:6846900 Cme11g01769 Cme-Chr11:25921359 6.82E-35 transposed
Cme10g01432 Cme-Chr10:17308943 Cme11g01769 Cme-Chr11:25921359 6.16E-49 transposed
Cme11g01594 Cme-Chr11:23720916 Cme11g01769 Cme-Chr11:25921359 7.73E-15 transposed
Cme11g01727 Cme-Chr11:25352249 Cme11g01769 Cme-Chr11:25921359 1.80E-47 transposed
Cme11g01769 Cme-Chr11:25921359 Cme12g00332 Cme-Chr12:4561282 2.39E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42221 PF03195 LOB 7.40E-41 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01769 - - csv:101215067 344.354