Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01780 ATGGGGAAAGAGAAGGCTCACATTAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAATCTACCACCACCGGGCATTTGATCTATAAGCTTGGTGGTATTGACAAGCGTGTCATTGAAAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAACGTGGTATTACCATCGATATTGCTTTGTGGAAATTTGAAACCACCAAATACTACTGCACCGTTATTGATGCTCCTGGACATCGCGATTTCATTAAGAACATGATTACTGGTACCTCTCAAGCTGATTGTGCTGTTCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGTCAAACACGTGAGCATGCTTTGCTCGCGTTTACTCTCGGTGTCAAGCAGATGATTTGCTGCTGCAACAAGGTGAGGTTCTACTTCGAATGTTTGCGTTTCGATCATATGGATGCCACCACCCCCAAGTACTCCAAGGCAAGGTATGATGAAATTGTCAAGGAAGTTTCCTCCTACCTCAAAAAGGTTGGATACAACCCTGACAAAATCCCCTTTGTCCCCATCTCTGGTTTCGAAGGAGACAACATGATTGAGAGGTCGACCAACCTTGATTGGTACAAGGGTCCAACTCTCCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCGTCAGACAAGCCACTCCGTCTTCCACTTCAGGATGTGTACAAGATCGGTGGTATTGGAACTGTACCGGTTGGTCGTGTTGAGACTGGTGTCCTCAAACCTGGAATGGTGGTCACTTTTGGCCCTTCTGGACTGACCACTGAAGTCAAGTCTGTTGAGATGCACCACGAAGCTCTACCCGAGGCTGTTCCTGGTGACAATGTGGGATTCAATGTGAAGAATGTTGCCGTAAAGGATCTCAAGCGTGGTTTCGTGGCTTCCAACTCAAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACTTCTCAAGTCATTATCATGAACCACCCTGGACAAATTGGCAATGGTTATGCTCCAGTGCTTGATTGCCACACCTCTCACATTGCAGTGAAATTTGCTGAGATTCTAACCAAAATCGACAGGCGATCCGGTAAGGAACTTGAGAAGGAACCCAAGTTCTTAAAGAATGGTGATGCAGGTATGATTAAGATGATTCCCACCAAACCTATGGTGGTGGAAACCTTCTCTCAGTACCCTCCTCTTGGACGTTTCGCGGTAAGAGACATGAGACAGACAGTTGCTGTTGGCGTCATCAAGTCCGTTGAAAAAAAGGATCCAAGTGGTGCTAAGGTTACCAAGTCCGCAGTCAAGAAGGGAAAGTGA 1383 46.71 MGKEKAHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKVRFYFECLRFDHMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMIKMIPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKGK 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25980607 25982490 + MELO3C025753.2.1 Cme11g01780 342443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01780 460 Gene3D Translation factors 335 442 - -
Cme11g01780 460 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 458 - -
Cme11g01780 460 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 445 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cme11g01780 460 CDD EF1_alpha 9 239 - -
Cme11g01780 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 261 IPR027417 -
Cme11g01780 460 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Cme11g01780 460 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Cme11g01780 460 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Cme11g01780 460 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Cme11g01780 460 Pfam Elongation factor Tu domain 2 260 325 IPR004161 GO:0005525
Cme11g01780 460 SUPERFAMILY Translation proteins 243 333 IPR009000 -
Cme11g01780 460 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 242 IPR000795 GO:0003924|GO:0005525
Cme11g01780 460 CDD EF1_alpha_II 242 332 - -
Cme11g01780 460 Pfam Elongation factor Tu C-terminal domain 334 441 IPR004160 -
Cme11g01780 460 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 338 441 IPR009001 -
Cme11g01780 460 Hamap Elongation factor Tu [tuf]. 2 444 IPR004539 GO:0003746|GO:0005525|GO:0006414
Cme11g01780 460 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Cme11g01780 460 CDD EF1_alpha_III 335 438 - -
Cme11g01780 460 Gene3D - 1 240 IPR027417 -
Cme11g01780 460 Gene3D Translation factors 241 328 - -
Cme11g01780 460 PANTHER TRANSLATION FACTOR 1 458 - -
Cme11g01780 460 Pfam Elongation factor Tu GTP binding domain 6 233 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00348 Cme-Chr4:2760324 Cme11g01780 Cme-Chr11:25980607 4.55E-91 dispersed
Cme05g00722 Cme-Chr5:8457834 Cme11g01780 Cme-Chr11:25980607 0 dispersed
Cme09g00630 Cme-Chr9:6715988 Cme11g01780 Cme-Chr11:25980607 0 dispersed
Cme11g01780 Cme-Chr11:25980607 Cme12g01846 Cme-Chr12:24787993 4.11E-90 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01780 K03231 - csv:101213221 885.56