Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01785 ATGGAAATTGATCTGAACCAAACAGCCAGTGAGGTGGGGAAGAATGCATATTGCTATGGAAATTGTGAAGAGGGTCTTTGCAATTGTTGTTTATCCTCCTCAACTTCTTCTTGTTCCTCAAATTCATCGTCAACTCCCGTCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAGCAAATTTCCTCGGCGTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTTCAGCCACAGATCCTCTGCAGGGTCATCAATGTTCACCTACTCGCCAATAAGGAGAATGATGAGGTCTATACACAACTTACTCTCCGTCCCTTGCCAGAGTTATTAGGCACTGGTGTAGCGGGCAAAGAGCTGGAGGAATTGGCGTTGAATGGAGCTGATGGAGATGGGAGCGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAGACACTTACAGCGTCTGACACCAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCACTGGATTACACTCAGCTTAGACCGTCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTATTTCTGGTGATGCAGTGCTCTTTTTAAGGGGTGAGAATGGAGAGTTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCAAGAAATGGTCTTCCTGATTCAATTGTTGGCAACCAAAATTCTTGTGCAGACGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCACATTTGATGTGTTTTATAATCCGAGGGCATATCATGCACAATTTATCATATCTTGTCAGAAGTATGTGAAGAGTATCAATAATCCAGTGAGTGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCACCAGAAAGAAGGTTTAATGGTGTAGTTGTTGGAATTAGTGACATGGATCCCTTTAGATGGCCGAACTCAAAATGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGTGTGTCACCCTGGGAGATTGATCCTTCTGTTTCTCTCCCGCCTTTGAGTGTTCAGTCTTCTCCAAGGCTGAAGAAACTGAGGACTAGTCTGCAGGCAGCCCCGCCTAATAACTCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCGGTTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATGTAGGTATTGTATCACCCTTTTATGGATGTGATACTGTGAAACGTTCACTGGAGTTTGATGTGCGATCTTCTGCACAACAAAACCAAGTGTCAGGTGGAGTTGAAAAACTCAATATAGGTGATTATGTAAAGGTTCATTCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACTAGTAAACCAGAATATAGTTTAGGTGTTTGGGGAAAGTTCAATCTTAGCGACAACTCTTTTAACACATTTCAATCACCGAACTCCAATTTTTATCACATGGCGTCTAACAGCGCCCAAAAGATGTATTTCCCTCGTAGTGAGATGCACAGTACTGGCCAAGCAGCCGTGATGCTCTCAAATGATAGCAACTTTCCAAGAGAAAGTGCCTTGTTCAACCCATCTGCTGTTGGTGCTAATGTTACCAGGACTAGAATGGAAAGGACTAATCGTTCACTTGATCGGGAATCTCTACATCTAGTGTCTGCTCCTCCAACTTTAGGGTCGAATATGAGGAATTCCAAGGGGGAAAATGTGAATGATAATGCAACTGGCTGTAAGCTTTTTGGCTTTTCCTTGACTACGGAAACTGCTACCAACGTTGAAAGTTCAGGAAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCTATCGATCTCTCTAGGCTGAATGGCTATACTGATCTGCTTTCTGAACTGGAGCGGCTGTTTAGCATGGAAGGTCTCTTGAAAGATCCCGATAAAGGATGGCGAGTTTTGTACACAGACAACGAGAACGATGTAATGGTTGTTGGGGATTATCCATGGCATGACTTCTGTGATGCGGTTTCAAAAATCCACATATATACTCAAGAAGAAGTGGAAAAGATGACAAATGGAGTGGTCAGTGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAAGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTCCTCCAACAGCACTCAAAGTCGGTAGCTTTTCTGCCATGAATGGCGTGATGTAG 2439 44.44 MEIDLNQTASEVGKNAYCYGNCEEGLCNCCLSSSTSSCSSNSSSTPVSSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQISSASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLRPLPELLGTGVAGKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLISGDAVLFLRGENGELRLGIRRAVRPRNGLPDSIVGNQNSCADDLARVVKAISTKSTFDVFYNPRAYHAQFIISCQKYVKSINNPVSVGTRFKMRFEMDDSPERRFNGVVVGISDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNSFTGRGGFMDFEDSVRSSKVLQGQENVGIVSPFYGCDTVKRSLEFDVRSSAQQNQVSGGVEKLNIGDYVKVHSNSSFTGFMESDRFLKVLQGQEICSLRPPTSKPEYSLGVWGKFNLSDNSFNTFQSPNSNFYHMASNSAQKMYFPRSEMHSTGQAAVMLSNDSNFPRESALFNPSAVGANVTRTRMERTNRSLDRESLHLVSAPPTLGSNMRNSKGENVNDNATGCKLFGFSLTTETATNVESSGKRSCTKVHKQGSLVGRAIDLSRLNGYTDLLSELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWHDFCDAVSKIHIYTQEEVEKMTNGVVSDDTQSCLDQAPLCMEASKSSSVGQPDSPPTALKVGSFSAMNGVM 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26016763 26029648 - MELO3C025758.2.1 Cme11g01785 342448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01785 812 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 790 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme11g01785 812 Pfam AUX/IAA family 601 759 IPR033389 -
Cme11g01785 812 Gene3D - 670 763 - -
Cme11g01785 812 CDD B3_DNA 167 269 IPR003340 GO:0003677
Cme11g01785 812 Pfam Auxin response factor 296 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme11g01785 812 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
Cme11g01785 812 ProSiteProfiles PB1 domain profile. 674 758 IPR000270 GO:0005515
Cme11g01785 812 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Cme11g01785 812 SUPERFAMILY CAD & PB1 domains 676 753 - -
Cme11g01785 812 SMART B3_2 169 271 IPR003340 GO:0003677
Cme11g01785 812 PANTHER AUXIN RESPONSE FACTOR 17 790 - -
Cme11g01785 812 Gene3D - 167 271 IPR015300 -
Cme11g01785 812 Gene3D - 332 402 - -
Cme11g01785 812 SUPERFAMILY DNA-binding pseudobarrel domain 163 280 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00264 Cme-Chr8:1707190 Cme11g01785 Cme-Chr11:26016763 2.45E-147 dispersed
Cme11g01785 Cme-Chr11:26016763 Cme05g02083 Cme-Chr5:29030924 7.08E-20 dispersed
Cme11g01785 Cme-Chr11:26016763 Cme12g01152 Cme-Chr12:19599255 6.18E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42222 PF02309 AUX_IAA 3.50E-08 CL0072 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01785 - - cmo:103501935 1606.65