Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme11g01790 | ATGACTGTAATCGACATCATCTTCCGAGTCGATTCCATTTGCAAGAAATACGAAAAGTACGATGTCGTGAAACAGCGTGAGCTCAATGCTTATGGTGATGATGCCTTCGCTCGCCTCTTCGCCGCCGTCGAACACGAAATCCACGCCGCTCTTCAGAAATCTGAGGCTGCTTCAACTGAGACGAATAGGGCTGCTGCTGTTGCGATGAACGCTGAGGTTCGACGGAAGAAGGCTCGATTGATGGATGAAGTCCCTAAGCTTCGTAAATTGGCTCACAAGAAGGTTAAAGGGGTTCCAAAAGAAGAGCTGGAGGTCAGAGATGATCTTGTTCTTGCACTTGAAGAGAAGATTAAAGCCATACCAGATGGGAAAACCTCAGGAGCCAAACATTCTGGAGGATGGGGCTCCTCCTCCTCATTTAACAATATCAAGTTTGATTCATCATCAGATGGAAACTTCGAGAGCGAGTATTTCCAGCAAAGTGAAGAATCAAGTCAATTTCGAAATGAGTATGAAATGCGGAAGATGAAACAGGACCAAGGTCTCGATGTCATATCCGAAGGTTTGGACATGCTGAAAAATCTGGCTCATGATATGAATGAGGAATTGGACAGACAAGTTCCATTAATCGAGGAGATTGACTCAAAGGTGGACAAGGTGACTGATGAGATTAAAAATACCAATGTTAGGCTCAAGGAAACACTCTATGAGCATATTGAGTTGAGTTGGTTTAAGAGGTTATTTTTTCATTGGTTGAAATATGGGATGATAGTAAATATGGAGAAGGAGCTATCAACTTCAATACTCTGGACTTTGATGATCTTTTCAGCTTTGTGTATAATTTCATTTCATGGGTTTATTGTAAAATTTATATCCCCTTTTTTCATTTTGCTTTATTGA | 900 | 41.44 | MTVIDIIFRVDSICKKYEKYDVVKQRELNAYGDDAFARLFAAVEHEIHAALQKSEAASTETNRAAAVAMNAEVRRKKARLMDEVPKLRKLAHKKVKGVPKEELEVRDDLVLALEEKIKAIPDGKTSGAKHSGGWGSSSSFNNIKFDSSSDGNFESEYFQQSEESSQFRNEYEMRKMKQDQGLDVISEGLDMLKNLAHDMNEELDRQVPLIEEIDSKVDKVTDEIKNTNVRLKETLYEHIELSWFKRLFFHWLKYGMIVNMEKELSTSILWTLMIFSALCIISFHGFIVKFISPFFILLY | 299 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 26079597 | 26082976 | + | MELO3C025764.2.1 | Cme11g01790 | 342453 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme11g01790 | 299 | PANTHER | SYNTAXIN | 1 | 235 | IPR045242 | - | |
| Cme11g01790 | 299 | Coils | Coil | 210 | 230 | - | - | |
| Cme11g01790 | 299 | SMART | tSNARE_6 | 167 | 234 | IPR000727 | - | |
| Cme11g01790 | 299 | CDD | SNARE_Qc | 177 | 233 | - | - | |
| Cme11g01790 | 299 | Gene3D | - | 172 | 233 | - | - | |
| Cme11g01790 | 299 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 172 | 234 | IPR000727 | - | |
| Cme11g01790 | 299 | SUPERFAMILY | SNARE fusion complex | 168 | 232 | - | - | |
| Cme11g01790 | 299 | ProSitePatterns | Syntaxin / epimorphin family signature. | 178 | 217 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cme11g01790 | 299 | PANTHER | SYNTAXIN-73 | 1 | 235 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme04g02538 | Cme-Chr4:31617184 | Cme11g01790 | Cme-Chr11:26079597 | 9.14E-109 | dispersed | |
| Cme04g02539 | Cme-Chr4:31617200 | Cme11g01790 | Cme-Chr11:26079597 | 9.14E-109 | dispersed | |
| Cme11g01789 | Cme-Chr11:26079179 | Cme11g01790 | Cme-Chr11:26079597 | 1.16E-62 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme11g01790 | K08506 | - | csv:101211289 | 418.313 |