Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01798 ATGGGGAAAGACGTTGAAGTTGCTGAGCAAGGTGAATTCCAAAGCAAAGACTACCAAGACCCACCTCCCGCCCCTCTCATCGATCCCGAAGAGCTCACTAAATGGTCTCTTTACAGAGCCGCCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTTTACGTCACCGTTTTGACCGTTATCGGTTACTCCCACCAGAGGGACTCTACCCCCGACCCCTGTAGCGGTGTTGGCATTCTCGGTATCGCTTGGGCCTTCGGTGGTATGATCTTTATCCTTGTTTACTGCACCGCCGGTATCTCCGGTGGCCACATTAACCCTGCTGTCACTTTCGGCCTTTTCTTGGCTCGTAAAGTCTCTCTGGTTCGTGCTGTATTGTACATGCTTGCTCAATGTGCCGGTGCTATTTGCGGCTGTGGCTTGGTTAAAGCCTTCCAATCTGCTTATTATGTTAGATATAACGGTGGTGCTAACATGCTTAGTGATGGTTACAACAAAGGAACTGGGTTGGGTGCTGAAATTATTGGGACTTTTGTTCTAGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCTCACGTTCCTGTTTTGGCTCCTCTCCCAATTGGGTTTGCTGTGTTTATGGTTCACTTGGCTACAATCCCCATTACCGGAACTGGAATTAACCCTGCTAGAAGTTTCGGAGCTGCTGTCATTTTCAACAAAGAGAAAGCCTGGGATGATCAATGGATCTTCTGGGTTGGACCATTCATTGGAGCTGCAATTGCTGCAATTTACCATCAGTATGTGCTCAGAGCTGGCGCCATTAAAGCTCTTGGATCTTTCAGGAGCAACGCTTGA 852 48.47 MGKDVEVAEQGEFQSKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQRDSTPDPCSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMLAQCAGAICGCGLVKAFQSAYYVRYNGGANMLSDGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26126094 26127714 - MELO3C025772.2.1 Cme11g01798 342461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01798 283 MobiDBLite consensus disorder prediction 1 24 - -
Cme11g01798 283 CDD MIP 39 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme11g01798 283 TIGRFAM MIP: MIP family channel proteins 43 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme11g01798 283 Pfam Major intrinsic protein 31 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme11g01798 283 SUPERFAMILY Aquaporin-like 30 269 IPR023271 -
Cme11g01798 283 Gene3D Glycerol uptake facilitator protein. 24 283 IPR023271 -
Cme11g01798 283 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Cme11g01798 283 PANTHER AQUAPORIN PIP2-4-RELATED 1 283 - -
Cme11g01798 283 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme11g01798 283 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme11g01798 283 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme11g01798 283 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme11g01798 283 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme11g01798 283 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cme11g01798 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 283 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g02309 Cme-Chr8:30079583 Cme11g01798 Cme-Chr11:26126094 9.71E-158 dispersed
Cme08g02311 Cme-Chr8:30088714 Cme11g01798 Cme-Chr11:26126094 1.11E-168 dispersed
Cme08g02314 Cme-Chr8:30107847 Cme11g01798 Cme-Chr11:26126094 1.01E-144 dispersed
Cme10g01052 Cme-Chr10:8922839 Cme11g01798 Cme-Chr11:26126094 6.74E-149 dispersed
Cme09g01771 Cme-Chr9:22174537 Cme11g01798 Cme-Chr11:26126094 2.87E-143 transposed
Cme10g00071 Cme-Chr10:533417 Cme11g01798 Cme-Chr11:26126094 6.91E-166 wgd
Cme11g01798 Cme-Chr11:26126094 Cme04g02532 Cme-Chr4:31581885 1.41E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01798 K09872 - csv:101215300 554.673