Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01800 ATGGCCATGGCCATAGCTCATCACAGAGAGAGTAGTAGTGGGAGTATAACCAGGCATCTTGATAGTTCTGGGAAGTACGTTCGTTACACTTCAGAGCAGGTGGAGGCTCTTGAGAGAGTTTATGCTGAGTGCCCTAAGCCGAGTTCTCTTCGACGCCAGCAGCTTGTTCGGGAATGCCCAATTCTTTCCAACATAGAGCCCAAGCAGATCAAAGTCTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAAGCTTCTCGGCTGCAAACGGTGAACAGAAAATTGAATGCTATGAACAAGTTGTTAATGGAGGAGAATGATCGGCTGCAGAAACAAGTGTCGCAATTGGTGTGTGAAAATGGGTTTATGCGGCAGCAATTGCATACAGTGCCGGCAGCAGCAACTGCTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTCGACGAGATGCTAATAACCCAGCTGGACTCCTCTCCATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGATTGCAGAGATCCTTAAAGATCGTCCATCATGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACGCAGGTGTATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACTCTAAGATATACAATAACTTTAGAAAATGGAAGCCTTGTGGTTTGCGAGAGATCTCTCTCTGGTTCTGGTGCTGGTCCTAGTGAAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGTTATCTGATTCGACCATGTGAGGGTGGTGGGTCTATCATACATATTGTTGATCACCTAAATCTTGAGGCGTGGAATGTTCCTGAGGTGCTGCGGCCACTTTATGAATCGTCGAAAGTAGTGGCCCAGAAGATGACAATAGCACAAGTTTTTGATGACCTGTTATGCCGTACTGCTCTTGGAAAGTGGGCGGAGAAAGCTCTGCGATACGTTAGGCAAATAGCCCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTTGGCCGGCAACCTGCTGTTTTGCGAACCTTTAGCCAACGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGTTTTAATGACAATGGATGGTCGTTGATCAATTGTGAAGGTGCTGAGGATGTGGTACTCACTGTGAATTCTACGAAAAATTTTGGCACAACTTCGAACCCTGCTAACTCCTTGACATTTCCTGGGGGAGTTCTTTGTGCTAAGGCATCTATGCTGCTCCAAAACATTCCTCCTGCCGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATTGATGCATACTCCGCAGCAACCCTTAAAGCCAATTCATATACATATCCAGGGATGAGACCCACGAGGTTTACCGGTAGCCAAATCATCATGCCACTTGGTCACACAATTGAGCACGAAGAGTTGCTTGAAGTAATCCGACTTGAAGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCAAGGGATATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTTGGAGCTTGTTCAGAACTCATTTTCGCTCCTATTGATGAGATGTTCCCAGATGATGCCCCATTATTGCCTTCTGGCTTTCGAATCATCCCGTTGGATTCCAGAACAGAGTGA 1758 46.64 MAMAIAHHRESSSGSITRHLDSSGKYVRYTSEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLHTVPAAATADASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSEAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAQVFDDLLCRTALGKWAEKALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLTVNSTKNFGTTSNPANSLTFPGGVLCAKASMLLQNIPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYTYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTE 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26163010 26169881 + MELO3C025774.2.1 Cme11g01800 342463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01800 585 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Cme11g01800 585 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 191 IPR044830 GO:0003700
Cme11g01800 585 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 191 584 IPR044830 GO:0003700
Cme11g01800 585 Gene3D - 176 339 IPR023393 -
Cme11g01800 585 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Cme11g01800 585 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Cme11g01800 585 SMART START_1 131 344 IPR002913 GO:0008289
Cme11g01800 585 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 191 - -
Cme11g01800 585 Pfam START domain 193 334 IPR002913 GO:0008289
Cme11g01800 585 SMART HOX_1 22 88 IPR001356 GO:0003677
Cme11g01800 585 SUPERFAMILY Bet v1-like 160 320 - -
Cme11g01800 585 CDD bZIP 77 116 - -
Cme11g01800 585 CDD homeodomain 25 85 IPR001356 GO:0003677
Cme11g01800 585 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 191 584 - -
Cme11g01800 585 Coils Coil 80 121 - -
Cme11g01800 585 Gene3D - 19 91 - -
Cme11g01800 585 ProSiteProfiles START domain profile. 162 324 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme11g01800 Cme12g00460 CCT
Cme11g01800 Cme12g00460 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00924 Cme-Chr7:9713072 Cme11g01800 Cme-Chr11:26163010 5.16E-24 dispersed
Cme11g01800 Cme-Chr11:26163010 Cme12g00460 Cme-Chr12:7573593 0 dispersed
Cme11g01800 Cme-Chr11:26163010 Cme01g00416 Cme-Chr1:2932684 1.97E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42224 PF01852 START 4.30E-31 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01800 K09338 - csv:101215773 1086.63