Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01803 ATGAAAGAAGCAGAGAAAACTTTAGATCCTCAACTATGGCATGCCTGTGCCGGAGGTATGGTTCAGATGCCGGCGATTAACTCCAAGGTTTTCTACTTTCCTCAGGGTCACGCCGAGCACGCTCAGGCCACTGTCGATTTCACCTCTTCGCTTAGAGTCCCGCCTCTTATTCCTTGCCGAGTGCTCGCCGTCAAGTTCTTGGCTGACCTTGAAACGGATGAGGTTTTTGCTAATGTAAGAATGGTTCCATTGCCGAACAACGACCTTAATTTTGAGGAAGAAGGTGGGTTTGGGAGTAATGGGTCTGAGAATAATATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACTCAATCCGATGCCAACAACGGCGGTGGGTTCTCGGTTCCGAGGTACTGTGCAGAGACGATTTTTCCACGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGATGTTCACGGCGAGGTTTGGAAGTTCCGCCATATATATAGGGGGACGCCTCGCCGGCATTTGTTGACTACTGGGTGGAGTACTTTTGTGAATCAGAAGAAGCTCGTCGCCGGTGATTCGATTGTTTTTCTAAGATCCAAAAATGGCGACCTCTGTGTCGGAATCCGGCGAGCCAAACGCGCAATTGGGTGTGCCTCCGATCACCCGTACGGATGGAATCCCGGCGGTGGAAATTGCATCCCACCTTACGGTGGATTGACGATGTTTTTAAGAGATGATGACAACAAGTTGAGTAGAAAAGGGTCTTTAAGTTCCAGTGGTAGTGGTGGGAATTTGAGGGGAAAAGGTAAAGTAAGGCCGGAATCAGTGATGGAAGCGGCGGCGCTTGCGGCGAGTGGACAGCCGTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTCTGTGTTAAGGCCTCATCGGTAAGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGACTTCTTCAGGTGACATGGGATGAACCAGATTTGTTACAGAATGTGAAGCGTGTTAGTCCATGGTTGGTTGAACTGGTATCGAACATGCCCGTCATTCAATTATCACCTTTTTCTCCACCGAGAAAGAAGTTTCGACTACCACAACATCCAGACTTTCCCCTCGACAGCCAATTCCCACTGTCGTCATCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTGGGGCTGGTTCCGTCCAGTTTTCAGCAGATTGATTTTCACTCTAGGATTTCCAATCGATCAGTTACAGACCACAGAGACAGCAGCAGTCATAACTCGTCGGTGTTGCTAAACGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCCGATTCAGTGAAGAAGCATCAATTTTTACTCTTTGGTCAACCTATACTGACTGAACAGCAAATCACTTGCAGCTCTTCCAGTGACATTCACTCACCTCGTACCGAGAAAAGTTCCTCAGATGTAAATGTGGAGAGGGTGAAGTTTCACTCCGATGGCTCAGGATCCGCTTTCAAGCAGCAAATTTCTCCTAACAAATCACCAGGAGTAGGATTTCCATGGTACCAGGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGACGTAGGCCGCACACTCAACCTTTCGGTCATCAGTTCATATGAAGAACTATACAGGAGGCTTGCAAATATGTTTGGAATGGAAAAACCAGACATTCTTAGCCATGTTTTGTACCAAGATGCAACAGGTGCTGTGAAACAAGCTGGAGATAAACCATTCAGTGATTTCATCAAAACAGCTAGAAGATTGACAATACTAACAGACTCGGGTTCAGACAAGCTGGGAAGGACATTGATGGACGGAATGAGAAGTGGTGAAAATGGATTAGATGCTTCAAACAAGACTGGCCCTTTAAGCATATTTGCATAG 2151 47.33 MKEAEKTLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRVPPLIPCRVLAVKFLADLETDEVFANVRMVPLPNNDLNFEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCASDHPYGWNPGGGNCIPPYGGLTMFLRDDDNKLSRKGSLSSSGSGGNLRGKGKVRPESVMEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPLSSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQIDFHSRISNRSVTDHRDSSSHNSSVLLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSSDIHSPRTEKSSSDVNVERVKFHSDGSGSAFKQQISPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVISSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKLGRTLMDGMRSGENGLDASNKTGPLSIFA 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26202658 26206666 - MELO3C025777.2.1 Cme11g01803 342466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01803 716 MobiDBLite consensus disorder prediction 252 272 - -
Cme11g01803 716 SMART B3_2 112 214 IPR003340 GO:0003677
Cme11g01803 716 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme11g01803 716 MobiDBLite consensus disorder prediction 489 517 - -
Cme11g01803 716 ProSiteProfiles PB1 domain profile. 604 684 IPR000270 GO:0005515
Cme11g01803 716 Gene3D - 319 392 - -
Cme11g01803 716 CDD B3_DNA 111 212 IPR003340 GO:0003677
Cme11g01803 716 MobiDBLite consensus disorder prediction 540 561 - -
Cme11g01803 716 Gene3D - 110 214 IPR015300 -
Cme11g01803 716 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Cme11g01803 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 693 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme11g01803 716 Gene3D - 604 689 - -
Cme11g01803 716 PANTHER AUXIN RESPONSE FACTOR 2 693 - -
Cme11g01803 716 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Cme11g01803 716 SUPERFAMILY DNA-binding pseudobarrel domain 107 217 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01500 Cme-Chr3:24227557 Cme11g01803 Cme-Chr11:26202658 7.91E-111 dispersed
Cme08g02302 Cme-Chr8:30020233 Cme11g01803 Cme-Chr11:26202658 0 dispersed
Cme11g01803 Cme-Chr11:26202658 Cme02g02113 Cme-Chr2:26881616 6.12E-75 dispersed
Cme11g02307 Cme-Chr11:30130044 Cme11g01803 Cme-Chr11:26202658 7.99E-13 dispersed
Cme11g01803 Cme-Chr11:26202658 Cme12g01152 Cme-Chr12:19599255 7.92E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42225 PF02362 B3 1.40E-21 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01803 - - csv:101216500 1372.84