Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01806 ATGGCTTATGGTAGTTCTAGATCCGTAAGGTTCCAAGACGATCTTGAATCCTCTGCCCTGCCTACTATCAATGGTGGTGGTGTGACAAAGATCATATACAACATTGATGGCACACAAATACCGGAATTGAGTGGCAAGAGGACAGCCGCTTCTAGGAAGTCTGGACGATCCCTGAGAGCTAAAGTCTTGTCTAGAGTTTTCTCAGAGGATTATGAGAGAGTACAAAGAAAAATACTGGATCCTAGGGGGCAAGTCATAAGGCGATGGAATAAGATATTTTTAGTTGCTTGTTTAATCTCTTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTGTGGTCAGGGATAAGGTGTGTATTGATATAGGAGTAAGTCTTGAAGTCGTCCTCACAACTATAAGATCTATAGCAGATGTTTTCTACACAATTCAGATTTTTATTAAGTTTCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTTATAGATCCTTGTAAGATAGCAATAAGGTATCTACGCCATGGTTTCTGGATTGATCTCATTGCAGCCGTGCCAGTTCCCCAGGTACTGATCTGGATTGTCATTCCCAACCTTAGTGGTTCAACAATGACTAACACCAAGAACTTTCTAAGGTTCTTTCTCATATTCCAGTACTTCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAAGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAAGACTTTGTTATTTTGACAAATCTTGTAAAGATGGATTTTTTGATTGTCATAAGGTTGATGACCCTCAAAGGGATTCATGGTTTAATACGAGCAACATTAAAAGCTCATGCAATCCAAATGGTTCCTTTTATCAATTTGGTATATATGGTGATGCAATAACTTTCCATGTCACAACCTCACCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTCAGTTCCTTGGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAATTTTTGCCATTATTGTGGCAACTCTTGGATTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATATCTCCAATCGACAACAGTTCGATTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCACCACAGGCAACTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAAGTGCTGCTTAGAAGTCTTCCCTTGGATCTCCGAAGAGACATAAAACGTCACCTTTGCCTTGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGATGCAATATGTGAGAGACTTAAACCCGCCTTGAGCACAGAAGGCACATTTCTTGTGCGAGAAGGTGACCCCGTCAATGAAATGCTATTCATAATCAGAGGTCATCTTGACTCATACACCACTAACGGTGGTAGAACTGGATTTTTCAACTCCTGTCGTATTGGTCCGGGTGATTTCTGTGGTGAGGAGCTGCTGACTTGGGCTCTTGACCCTCGTCCAAGTGTTGTGCTTCCTTCTTCAACTCGCACGGTCAAAGCCATCTCCGAGGTAGAAGCATTTGCTCTTATAGCTGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTGAGACACAAGTTTCGATTCTACTCACATCAATGGCGAACATGGGCTGCATGCTTTGTTCAAGCAGCATGGCGAAGATATAAGAGACGGAAAGAGCGTGCTGAACTCAGGGCTAGAGAGAGTTATCCAGCTACCAAAGTCGAGTCCCCACGTTCACCACCAATGACATCAAACTTGGATTCACGCTCAGGAAATGCTAGAAGGGGATTGAATAAGCGTTGTGTTTCGGATGCTGGGGTCGTAAGCTCATTGCAGAAGCCAGAAGAGCCTGACTTCTCCATTGTTGAGGAGTAA 2103 42.94 MAYGSSRSVRFQDDLESSALPTINGGGVTKIIYNIDGTQIPELSGKRTAASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLISLFVDPLFFYLPVVRDKVCIDIGVSLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPCKIAIRYLRHGFWIDLIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYFPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCYFDKSCKDGFFDCHKVDDPQRDSWFNTSNIKSSCNPNGSFYQFGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEVLLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRARESYPATKVESPRSPPMTSNLDSRSGNARRGLNKRCVSDAGVVSSLQKPEEPDFSIVEE 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26249176 26253342 - MELO3C025781.2.1 Cme11g01806 342469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01806 700 SMART cnmp_10 480 611 IPR000595 -
Cme11g01806 700 Gene3D Helix hairpin bin 407 471 - -
Cme11g01806 700 MobiDBLite consensus disorder prediction 653 668 - -
Cme11g01806 700 CDD CAP_ED 480 611 IPR000595 -
Cme11g01806 700 MobiDBLite consensus disorder prediction 641 673 - -
Cme11g01806 700 Gene3D - 85 404 - -
Cme11g01806 700 SUPERFAMILY cAMP-binding domain-like 410 605 IPR018490 -
Cme11g01806 700 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
Cme11g01806 700 PANTHER - 6 699 - -
Cme11g01806 700 SUPERFAMILY Voltage-gated potassium channels 80 402 - -
Cme11g01806 700 Pfam Ion transport protein 89 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme11g01806 700 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme11g01806 700 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme11g01806 700 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme11g01806 700 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme11g01806 700 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme11g01806 700 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme11g01806 700 Gene3D Jelly Rolls 478 598 IPR014710 -
Cme11g01806 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 699 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00327 Cme-Chr4:2616233 Cme11g01806 Cme-Chr11:26249176 0 dispersed
Cme05g01491 Cme-Chr5:24333092 Cme11g01806 Cme-Chr11:26249176 0 dispersed
Cme08g02307 Cme-Chr8:30063052 Cme11g01806 Cme-Chr11:26249176 0 dispersed
Cme09g01973 Cme-Chr9:23623350 Cme11g01806 Cme-Chr11:26249176 0 dispersed
Cme11g01806 Cme-Chr11:26249176 Cme04g01904 Cme-Chr4:26747348 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01806 K05391 - csv:101210775 1375.15