Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01811 ATGGCTTCCTCTAGACTCCTTTCTCCTTCTCCTTCTCCTAATCCTATTGATGTTGAAAAGATCGACACTACATGGTACGATGGACGTGCCACTTTCTATGGTGACTTTAGAGGTGGTGAAACTATGAAAGGAGCTTGTGGATATGGCAATCTATTCCAGCAAGGTTATGGGCTAGCAACAGCAGCACTAAGCACAGCATTGTTCAACGATGGTGGAGCTTGTGGAGCATGTTTTGAGATAATGTGTGTGAACAACGAACACAATTGGTGCATACCAAATGCAGGCACAATCAAAATAACAGCCACAAACTTCTGTCCTCCAGACTACACAAAAACACAAGACATTTGGTGCAATCCACCACAACGCCATTTTGATCTATCTCTCTACATGTTCACCAAAATGGCCCCTTATAGGGCTGGGGTCATCCCAGTTCGTTACCGTAGAACACGTTGCCATAAACTAGGAGGTATACGGTTCGAGTTGAAAGGGAACCCGTATTGGCTTCTTGTTTTGCCCTACAATGTTGGTGGTGCTGGTGATGTTATTGATGTTCAGATTAAAGGCTCTTCTACTGGGTGGCTTCAAATGAAAAGGAATTGGGGCCAAAATTGGGAAGTTGGTAGCTATTTGGTGGGGCAGAGTTTGTCTTTTAGAGTTACTACTAGTGATTGGAAGACTAAAGAGTTTGATAATGTTGTGCCTAGCTCTTGGGAGTTTGGGCAGAACTTTGTAGGAAAATATAATTTCTAA 750 43.07 MASSRLLSPSPSPNPIDVEKIDTTWYDGRATFYGDFRGGETMKGACGYGNLFQQGYGLATAALSTALFNDGGACGACFEIMCVNNEHNWCIPNAGTIKITATNFCPPDYTKTQDIWCNPPQRHFDLSLYMFTKMAPYRAGVIPVRYRRTRCHKLGGIRFELKGNPYWLLVLPYNVGGAGDVIDVQIKGSSTGWLQMKRNWGQNWEVGSYLVGQSLSFRVTTSDWKTKEFDNVVPSSWEFGQNFVGKYNF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26286236 26287441 - MELO3C025785.2.1 Cme11g01811 342474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01811 249 Gene3D - 12 152 IPR036908 -
Cme11g01811 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Cme11g01811 249 SUPERFAMILY Barwin-like endoglucanases 24 174 IPR036908 -
Cme11g01811 249 SUPERFAMILY PHL pollen allergen 155 244 IPR036749 -
Cme11g01811 249 SMART dpbb_1 60 146 IPR007112 -
Cme11g01811 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Cme11g01811 249 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Cme11g01811 249 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Cme11g01811 249 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Cme11g01811 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Cme11g01811 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Cme11g01811 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Cme11g01811 249 PANTHER EXPANSIN-A21-RELATED 23 249 - -
Cme11g01811 249 Gene3D - 156 249 IPR036749 -
Cme11g01811 249 Pfam Lytic transglycolase 60 146 IPR009009 -
Cme11g01811 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 156 IPR007112 -
Cme11g01811 249 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Cme11g01811 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Cme11g01811 249 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Cme11g01811 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Cme11g01811 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Cme11g01811 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Cme11g01811 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Cme11g01811 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Cme11g01811 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Cme11g01811 249 PANTHER EXPANSIN-A15 23 249 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01294 Cme-Chr7:18161533 Cme11g01811 Cme-Chr11:26286236 3.67E-147 dispersed
Cme11g01811 Cme-Chr11:26286236 Cme09g00465 Cme-Chr9:4473432 2.85E-92 dispersed
Cme11g01811 Cme-Chr11:26286236 Cme08g02411 Cme-Chr8:30997262 6.13E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01811 - - csv:101211019 486.493